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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gactctgctgcactagttttttttgcaacctcctaccttactgttggttatcatatcagtaagtaaagctgaaatcagttacatgatgtttcttttgtagGTATTCAGGTCGGGGACTTTTTCTAGATCCTCCAACTGTGTATATTAAAAGTGAGGTCTACAATATTTCTTTGCCCCAATCAATGCAGCATGATCCTCAG

Basic information

species Zea mays
transcript GRMZM2G102156_T02
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G102156_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os08g14770.1 (Oryza sativa), 3'ss of exon 7
gactctgctgcactagttttttttgcaacctcctaccttactgttgg-ttatcatatc---agtaagtaaagctgaaatcagttacatgatgtttcttttgtagGTATTCAGGTCGGGGACTTTTTCTAGATCCTCCAACTGTGTATATTAAAAGTGAGGTCTACAATATTTCTTTGCCCCAATCAATGCAGCATGATCCTCAG
     || ||||    |||||  || | |      | |||   |||  || |||  ||   | | | ||||||||| |||| | || |||  ||| || |||||||| || || || |||||||||||||||||||| || ||||| |||||||   |   |  |||  ||||| | |||| ||| ||   ||||||||  | |
---catggtgcatatttttttcctgta-ctggaagcattatcattgaattttcacttctgaaatcaataaagctgagatcattcacttgagttttgttctgtagGTACTCGGGGCGAGGACTTTTTCTAGATCCTCCTACAGTGTACATTAAAAACAAAAGCGCCAACCTTTCTCTTCCCCCATCGATAATGCATGATCAACTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggttatcatatcagtaagtaaagctgaaatcagttacatgatgtttcttttgtagGTATTCAGGTCGGGGACTTTTTCTAGATCCTCCAACTGTGTATATTAAAAGTGAGGTCTACAATATTTCTTTGCCCCAATCAATGCAGCATGATCCTCAG
                                         tgtttctttt  CT-rich tract
              taagtaaa  TA-rich tract