Sequence
atgc intronic sequence ATGC exonic sequencegtttgtccactttctagttctactctgtcttcattttttcttcaaaagaaatttgtaatgaagttttggttgtgcagcaaggttggctgaacattatattgattctctaaatctttgatgtagATTAAAGACAAAATGCTCATCCCTCAATTTGATGCATGCGCAAGTTGGTGGACTCAAGGGCCTGATTCTAACTTGCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G102156_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os08g14770.1 (Oryza sativa), 3'ss of exon 3
gtttgtccactttctagttctactctgtcttcattttttcttcaaaagaaatttgtaatgaagttttggttgtgcagcaaggttggctgaacattatattgattctctaaatctttgatgtagATTAAAGACAAAATGCTCATCCCTCAATTTGATGCATGCGCAAGTTGGTGGACTCAAGGGCCTGATTCTAACTTGCAG
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gtttgccaagcatctaggactattttgtaa-------------aaaggaaaattatgatgaaaatctaatag------aattttag-------ttacattgttgctc-attcttttggtgcagGTTAAAGACAAAACGATTGTTCCCCAGTTTGATGCATGTGCTAGTTGGTGGACACAAGGACCTGATTCTAACTTACAG
upper sequence: GRMZM2G102156_T01 (Zea mays), 3'ss of exon 3
lower sequence: Vv11s0052g01390.t01 (Vitis vinifera), 3'ss of exon 3
gtttgtccactttctagttctactctgtcttcattttttcttcaaaagaaatttgtaatgaagttttggttgtgca-gcaag-gttggctgaac-attatattgattctctaaatctttgatgtagATTAAAGACAAAATGCTCATCCCTCAA---TTTGATGCATGCGCAAGTTGGTGGACTCAAGGGCCTGATTCTAACTTGCAG
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-----------------------caggtagatacatattatacaatacat-ttcttaatggtgctataaatacagatgcaattgtattctgaactaattttttcatttttta--tgtccaatatagGTCCAGAATAATGATTTCATTGCACAACAGTTTGATGCATGTGCTAGTTGGTGGACTCAAGGACCTGATGCCACTTTGCAG
upper sequence: GRMZM2G102156_T01 (Zea mays), 3'ss of exon 3
lower sequence: PP1S68_291V6.1 (Physcomitrella patens), 3'ss of exon 5
-----------------------------------------------------gtttgtccactttctagttctactctgtcttcattttttcttcaaaagaaatttgtaatgaagttttggttgtgcagcaaggttggctgaacattatattgattctctaaatctttgatgtagATTAAAGACAAAATGCTCATCCCTCAATTTGATGCATGCGCAAGTTGGTGGACTCAAGGGCCTGATTCTAACTTGCAG
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gtgggattgctttgaaacgttatgatagtgtcatgtatatgaagttgctgaaacccttgggactctttgtgtatacactgattctatttgg-ctccgatggagagtccaagtctaactttgatcccacgatta---taattttccatggtcggtagTCTGGAACGCCTTCA--------ACCGGTAAGACGATTGCGACGCAGTTTGATGCATGTGCAAGCTGGTGGACTCAAGGCCCTGATTCTATCTTGCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gttgtgcagcaaggttggctgaacattatattgattctctaaatctttgatgtagATTAAAGACAAAATGCTCATCCCTCAATTTGATGCATGCGCAAGTTGGTGGACTCAAGGGCCTGATTCTAACTTGCAG
tcttt CT-rich tract
aacattatattgatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtttgtccactttctagttctactctgtcttcattttttcttcaaaagaaatttgtaatgaagttttggttgtgcagcaaggttggctgaacattatattgattctctaaatctttgatgtagATTAAAGACAAAATGCTCATCCCTCAATTTGATGCATGCGCAAGTTGGTGGACTCAAGGGCCTGATTCTAACTTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA