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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagttcatgaccacctgtttaattctattattttattaaatgagtggttttgctgctttacttttgtttataataactttaaactctattgattttgttgtttagGGTACATGTGCTTATTTTGCCACAAATTCCTGAAGATCCTTTAGATGACCTGACTGATTGGTTTTCTGAGTCATCCTCAATTTTTATTTTTCTTAAAGAT

Basic information

species Zea mays
transcript GRMZM2G102156_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G102156_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os08g14770.1 (Oryza sativa), 3'ss of exon 2
gtagttcatgaccacctgtttaattctattat---tttatt--aaatgagtggttttgctgctttacttttgtttataataactttaaactctattgattttgttgtttagGGTACATGTGCTTATTTTGCCACAAATTCCTGAAGATCCTTTAGATGACCTGACTGATTGGTTTTCTGAGTCATCCTCAATTTTTATTTTTCTTAAAGAT
    ||||    |     |||   | ||| ||     || |  || |   | || ||| | || || ||   | ||| |    |||   || |     || |||| |||||||||| ||||| | |  |||||| ||||||||| |||||   ||| ||||| |||||||||||||||||||||||||||  ||||| ||  |||||||||
----ttca--gtctttcatttggatatatgataaacctactgcaacttgcttgtattgtttctgtatttcaatgtatgactgatttgtgctat-----ttctgttatttagGGTACCTGTGCATGTCCTGCCACCAATTCCTGAGGATCCCAAAGACGACCTAACTGATTGGTTTTCTGAGTCATCCTCAGCTTTTAGTTCACTTAAAGAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6056842|gb|AW091247.1|AW091247
EST:     GATCGTGAGTTATCAAATGACAAATTCTTGCTTTCTTACTTGAGAAACAG                         GGTACATGTGCTTATTTTGCCACAAATTCCTGAAGATCCTTTAGATGACCT
genomic: GATCGTGAGTTATCAAATGACAAATTCTTGCTTTCTTACTTGAGAAACAGgtagttcatg ... tgttgtttagGGTACATGTGCTTATTTTGCCACAAATTCCTGAAGATCCTTTAGATGACCT
EST: gi|27522053|gb|CA989159.1|CA989159
EST:     GATCGTGAGTTATCAAATGACAAATTCTTGCTTTCTTACTTGAGAAACAG                         GGTACATGTGCTTATTTTGCCACAAATTCCTGAAGATCCTTTAGATGACCT
genomic: GATCGTGAGTTATCAAATGACAAATTCTTGCTTTCTTACTTGAGAAACAGgtagttcatg ... tgttgtttagGGTACATGTGCTTATTTTGCCACAAATTCCTGAAGATCCTTTAGATGACCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctgctttacttttgtttataataactttaaactctattgattttgttgtttagGGTACATGTGCTTATTTTGCCACAAATTCCTGAAGATCCTTTAGATGACCTGACTGATTGGTTTTCTGAGTCATCCTCAATTTTTATTTTTCTTAAAGAT
                                          ttttgtt  CT-rich tract
           ttttgtttataataac  TA-rich tract