Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTTTACTGTGGTGGCCTTTTACTCAGCACAATCTTGTCCCTCAAGATTCTGTTACAGTAATCGATTCACGTTATGGTGAGAATTTTTCTGTGTACAAGgtttgtccactttctagttctactctgtcttcattttttcttcaaaagaaatttgtaatgaagttttggttgtgcagcaaggttggctgaacattatattgattctctaaatctttgatgtag

Basic information

species Zea mays
transcript GRMZM2G102156_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G102156_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os08g14770.1 (Oryza sativa), 5'ss of exon 3
GGCTTTACTGTGGTGGCCTTTTACTCAGCACAATCTTGTCCCTCAAGATTCTGTTACAGTAATCGATTCACGTTATGGTGAGAATTTTTCTGTGTACAAGgtttgtccactttctagttctactctgtcttcattttttcttcaaaagaaatttgtaatgaagttttggttgtgcagcaaggttggctgaacattatattgattctctaaatctttgatgtag
|  |||  ||||||||||||| ||||||||  ||||||| |||  ||||||||||||||| || ||||| |||| |||||||||||| || |  ||||||||||| | |   |||||  ||| | |||               ||| |||| || | |||||  | |  | |      ||  || |       ||| |||| | ||| |    |||| || ||
GTATTTGTTGTGGTGGCCTTTCACTCAGCATGATCTTGTACCTGTAGATTCTGTTACAGTTATTGATTCGCGTTTTGGTGAGAATTTCTCAGCATACAAGgtttgccaagcatctaggactattttgtaa-------------aaaggaaaattatgatgaaaatctaatag------aattttag-------ttacattgttgctc-attcttttggtgcag

upper sequence: GRMZM2G102156_T01 (Zea mays), 5'ss of exon 3
lower sequence: Vv11s0052g01390.t01 (Vitis vinifera), 5'ss of exon 3
GGCTTTACTGTGGTGGCCTTTTACTCAGCACAATCTTGTCCCTCAAGATTCTGTTACAGTAATCGATTCACGTTATGGTGAGAATTTTTCTGTGTACAAGgtttgtcc---actttctagttctactctgtct-tcattttttcttcaaaagaaatttgtaatgaagttttggttgtgcagcaaggttggctgaacattatattgattctctaaatctttgatgtag
 | | |  | |||||||| |||||||||||||| ||||| ||| ||||  ||||||||||||| || ||||| | |||||| |||||||||||  ||||||| |||     | || || ||  || |  |||| || ||| |  | |    |||| |    ||||     |||  |    | | ||||         ||  | |                       
AGATATTTTCTGGTGGCCATTTACTCAGCACAAACTTGTACCTGAAGAAACTGTTACAGTAATTGACTCACGCTGTGGTGAAAATTTTTCTGTCCACAAGgtctgtttcgtaattacttgtattagttagtctgtcttttgtaatcccttggaaactgtccatga----ctggaagaatggaagggttta--agttgttgcacttg---------------------