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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGAAACTTTGTTGCTAAGAGGGTATGATGTGAGCGCAGTTATTTTGGAAGATCGTGAGTTATCAAATGACAAATTCTTGCTTTCTTACTTGAGAAACAGgtagttcatgaccacctgtttaattctattattttattaaatgagtggttttgctgctttacttttgtttataataactttaaactctattgattttgttgtttag

Basic information

species Zea mays
transcript GRMZM2G102156_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G102156_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os08g14770.1 (Oryza sativa), 5'ss of exon 2
ATGAAACTTTGTTGCTAAGAGGGTATGATGTGAGCGCAGTTATTTTGGAAGATCGTGAGTTATCAAATGACAAATTCTTGCTTTCTTACTTGAGAAACAGgtagttcatgaccacctgt--ttaattctattattttattaa-atg-agtggttttgctgctttacttttgtttataataactttaaactctattgattttgttgtttag
| |||||| ||||||| ||||| ||||||||| || |||||||||||||||||||||  || || ||||||| |||| |||| || ||||||||||| ||||  || ||| |   ||||  ||  |   || | | |   |   || ||  |  | |  || |  ||||| ||| |||| |  |||    || || ||  |         
ACGAAACTCTGTTGCTCAGAGGATATGATGTGGGCTCAGTTATTTTGGAAGATCGTGGCTTGTCGAATGACAGATTCCTGCTCTCATACTTGAGAAAGAGgtgattaatgcctttctgttctttgtcaaatcactctgaaagtgtgcaggagcatagaagcatctcttttattt-taattatatta--tcctgttaataataa-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6056842|gb|AW091247.1|AW091247
EST:     GATCGTGAGTTATCAAATGACAAATTCTTGCTTTCTTACTTGAGAAACAG                         GGTACATGTGCTTATTTTGCCACAAATTCCTGAAGATCCTTTAGATGACCT
genomic: GATCGTGAGTTATCAAATGACAAATTCTTGCTTTCTTACTTGAGAAACAGgtagttcatg ... tgttgtttagGGTACATGTGCTTATTTTGCCACAAATTCCTGAAGATCCTTTAGATGACCT
EST: gi|27522053|gb|CA989159.1|CA989159
EST:     GATCGTGAGTTATCAAATGACAAATTCTTGCTTTCTTACTTGAGAAACAG                         GGTACATGTGCTTATTTTGCCACAAATTCCTGAAGATCCTTTAGATGACCT
genomic: GATCGTGAGTTATCAAATGACAAATTCTTGCTTTCTTACTTGAGAAACAGgtagttcatg ... tgttgtttagGGTACATGTGCTTATTTTGCCACAAATTCCTGAAGATCCTTTAGATGACCT