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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATGAAAGATGGCCGCATATATGGGTGGGGCTATAATAGTTACGGTCAAGCGACGAACGAGAAATCTACTTATGCTTGGTTTCCCTCTCCGGTCGATTGgtaggttttgtagtagcacaatcttgtttcttttgatgggctgaatgtaggactcttctggtgctgctcttgctaacattgtgaggtttgtttgcagcgctaggtccttgactatcatttctctgatgtag

Basic information

species Zea mays
transcript GRMZM2G074024_T02
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G074024_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os03g40260.1 (Oryza sativa), 5'ss of exon 7
CTATGAAAGATGGCCGCATATATGGGTGGGGCTATAATAGTTACGGTCAAGCGACGAACGAGAAATCTACTTATGCTTGGTTTCCCTCTCCGGTCGATTGgtaggttttgtagtagcacaatcttgtttcttttgatgggctgaatgtaggactc--ttctggtgctgctcttgctaacattgtgaggtttgtttgcagcgctaggtccttgactatcatttctc-tgatgtag
||||||||||  ||||||||||||| ||||||||||||||||| || |||||  | || || |||||||||||||||||||| |||||||| || |||||||| |  |   ||      ||| || |||| | ||    |||   | | | | |   ||   ||       |||  ||| |||     || |    ||   ||  ||| |   || |  ||| |  | || |||
CTATGAAAGACAGCCGCATATATGGTTGGGGCTATAATAGTTATGGCCAAGCCGCTAATGAAAAATCTACTTATGCTTGGTTCCCCTCTCCAGTTGATTGgtatgactctcagag---taatattctttcatctgtattgctatttttggtagttaattacagtatgaactttg--aactttgcacatttcg----caatcctcagtcttaacctgttctttttaataatatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32870804|gb|CF010486.1|CF010486
EST:     GCGACGAACGAGAAATCTACTTATGCTTGGTTTCCCTCTCCGGTCGATTG                         GTGTGTTGGTGAAGTGAGACGACTCGCCGCTGGAGGTGGCCATTCTGCTGT
genomic: GCGACGAACGAGAAATCTACTTATGCTTGGTTTCCCTCTCCGGTCGATTGgtaggttttg ... tctgatgtagGTGTGTTGGTGAAGTGAGACGACTCGCCGCTGGAGGTGGCCATTCTGCTGT
EST: gi|76021287|gb|DT948457.1|DT948457
EST:     GCGACGAACGAGAAATCTACTTATGCTTGGTTTCCCTCTCCGGTCGATTG                         GTGTGTTGGTGAAGTGAGACGACTCGCCGCTGGAGGTGGCCATTCTGCTGT
genomic: GCGACGAACGAGAAATCTACTTATGCTTGGTTTCCCTCTCCGGTCGATTGgtaggttttg ... tctgatgtagGTGTGTTGGTGAAGTGAGACGACTCGCCGCTGGAGGTGGCCATTCTGCTGT
EST: gi|71596102|gb|DR906853.1|DR906853
EST:     GCGGCGAACGAGAAATCTACTTATGCTTGGTTTCCCTCTCCGGTCGATTG                         GTGTGTTGGTGAAGTGAGGCGACTCGCCGCTGGAGGTGGCCATTCTGCTGT
genomic: GCGACGAACGAGAAATCTACTTATGCTTGGTTTCCCTCTCCGGTCGATTGgtaggttttg ... tctgatgtagGTGTGTTGGTGAAGTGAGACGACTCGCCGCTGGAGGTGGCCATTCTGCTGT