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gtaagttccgtttttaatgactggttcaagtagatatgtaagttgcgacatatttataagttttttatactgtttttagacataagatgtgatgcttttgtgtgatatgtttaatatgcttcatatatcttcattcagGTGATTAAGCAAGTTTCTTGTGGAGCTGTTCATGTCATGGCTCTATCCGAGGATGGTCTACTGCAAGCATGGG
species | Zea mays |
transcript | GRMZM2G074024_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGTTCAGATTACCCTCGTCTATTTTGGGGAGCTTTCACACCAAACACG GTGATTAAGCAAGTTTCTTGTGGAGCTGTTCATGTCATGGCTCTATCCGAGEST: gi|211129102|gb|FL371420.1|FL371420
genomic: GGTTCAGATTACCCTCGTCTATTTTGGGGAGCTTTCACACCAAACACGgtaagttccg ... cttcattcagGTGATTAAGCAAGTTTCTTGTGGAGCTGTTCATGTCATGGCTCTATCCGAG
EST: GGTTCAGATTACCCTCGTCTATTTTGGGAAGCTTTCCCACCAAACACG GTGGATAAAGCCAGGTTTCTTGTGGGAGCCGGTTCCTGTCAATGGCTEST: gi|29543619|gb|CB603999.1|CB603999
genomic: GGTTCAGATTACCCTCGTCTATTTTGGGGAGCTTTCACACCAAACACGgtaagttccg ... cttcattcagGTG-ATTAAGCAAG-TTTCTTGTGG-AGCTG-TTCATGTCA-TGGCT
EST: GGTTCAGATTACCCTCGTCTATTTTGGGGAGCTTTCACACCAAACACG GTGATTAAGCAAGTTTCTTGTGGAGCTGTTCATGTCATGGCTCTATCCGAGEST: gi|78112813|gb|DV531207.1|DV531207
genomic: GGTTCAGATTACCCTCGTCTATTTTGGGGAGCTTTCACACCAAACACGgtaagttccg ... cttcattcagGTGATTAAGCAAGTTTCTTGTGGAGCTGTTCATGTCATGGCTCTATCCGAG
EST: GGTTCAGATTACCCTCGTCTATTTTGGGGAGCTTTCACACCAAACACG GTGATTAAGCAAGTTTCTTGTGGAGCTGTTCATGTCATGGCTCTATCCGAGEST: gi|31663993|gb|CD573173.1|CD573173
genomic: GGTTCAGATTACCCTCGTCTATTTTGGGGAGCTTTCACACCAAACACGgtaagttccg ... cttcattcagGTGATTAAGCAAGTTTCTTGTGGAGCTGTTCATGTCATGGCTCTATCCGAG
EST: GGTTCAGATTACCCTCGTCTATTTTGGGGAGCTTTCACACCAAACACG GTGATTAAGCAAGTTTCTTGTGGAGCTGTTCATGTCATGGCTCTATCCGAGEST: gi|76930470|gb|DV172399.1|DV172399
genomic: GGTTCAGATTACCCTCGTCTATTTTGGGGAGCTTTCACACCAAACACGgtaagttccg ... cttcattcagGTGATTAAGCAAGTTTCTTGTGGAGCTGTTCATGTCATGGCTCTATCCGAG
EST: GGTTCAGATTACCCCTCGTCTATTTTGGGGAGCTTTCACACCAAACACG GTGATTAAAGCAAG
genomic: GGTTCAGATTACCC-TCGTCTATTTTGGGGAGCTTTCACACCAAACACGgtaagttccg ... cttcattcagGTGATTAA-GCAAG
aagatgtgatgcttttgtgtgatatgtttaatatgcttcatatatcttcattcagGTGATTAAGCAAGTTTCTTGTGGAGCTGTTCATGTCATGGCTCTATCCGAGGATGGTCTACTGCAAGCATGGG
gtttaat putative branch site (score: 4)
tcttcattc putative PPT
tgatatgtttaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttccgtttttaatgactggttcaagtagatatgtaagttgcgacatatttataagttttttatactgtttttagacataagatgtgatgcttttgtgtgatatgtttaatatgcttcatatatcttcattcagGTGATTAAGCAAGTTTCTTGTGGAGCTGTTCATGTCATGGCTCTATCCGAGGATGGTCTACTGCAAGCATGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG