Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   
3  
 5'  3'   
4  
 5'  3'   
5  
 5'  3'   
6  
 5'  3'   
7  
 5'  3'   
8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAAATTGGGGAATGGGAAGAGCCTCAGGTGGACCGATATTGCATGTGGCCGTGAGCATACCGCTGCAGTTGCTTCCGATGGATCACTGTTCACCTGGGgtaagttctgcacacttcgttcgaatacgtgcatgttagagtgccaaaaaaattaaatatagtttagatgagagaactaacaccttaattgcaatgttgt...

Basic information

species Zea mays
transcript GRMZM2G074024_T02
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71420798|gb|DR805186.1|DR805186
EST:     CCGTGAGCATACCGCTGCAGTTGCTTCCGATGGATCACTGTTCACCTGGG                         GTGCTAATGAGTTTGGCCAGTTGGGAGATGGGACAGAGGACAGCGCGAAAG
genomic: CCGTGAGCATACCGCTGCAGTTGCTTCCGATGGATCACTGTTCACCTGGGgtaagttctg ... atgcaatcagGTGCTAATGAGTTTGGCCAGTTGGGAGATGGGACAGAGGACAGCGCGAAAG
EST: gi|211129102|gb|FL371420.1|FL371420
EST:     CCGTGAGCATACCGCTGCAGTTGCTTCCGATGGATCACTGTTCACCTGGG                         GTGCTAATGAGTTTGGCCAGTTGGGAGATGGGACAGAGGACAGCGCGAAAG
genomic: CCGTGAGCATACCGCTGCAGTTGCTTCCGATGGATCACTGTTCACCTGGGgtaagttctg ... atgcaatcagGTGCTAATGAGTTTGGCCAGTTGGGAGATGGGACAGAGGACAGCGCGAAAG
EST: gi|29543619|gb|CB603999.1|CB603999
EST:     CCGTGAGCATACCGCTGCAGTTGCTTCCGATGGATCACTGTTCACCTGGG                         GTGCTAATGAGTTTGGCCAGTTGGGAGATGGGACAGAGGACAGCGCGAAAG
genomic: CCGTGAGCATACCGCTGCAGTTGCTTCCGATGGATCACTGTTCACCTGGGgtaagttctg ... atgcaatcagGTGCTAATGAGTTTGGCCAGTTGGGAGATGGGACAGAGGACAGCGCGAAAG
EST: gi|211158187|gb|FL395436.1|FL395436
EST:     CCGTGAGCATACCGCTGCAGTTGCTTCCGATGGATCACTGTTCACCTGGG                         GTGCTAATGAGTTTGGCCAGTTGGGAGATGGGACAGAGGACAGCGCGAAAG
genomic: CCGTGAGCATACCGCTGCAGTTGCTTCCGATGGATCACTGTTCACCTGGGgtaagttctg ... atgcaatcagGTGCTAATGAGTTTGGCCAGTTGGGAGATGGGACAGAGGACAGCGCGAAAG
EST: gi|78112813|gb|DV531207.1|DV531207
EST:     CCGTGAGCATACCGCTGCAGTTGCTTCCGATGGATCACTGTTCACCTGGG                         GTGCTAATGAGTTTGGCCAGTTGGGAGATGGGACAGAGGACAGCGCGAAAG
genomic: CCGTGAGCATACCGCTGCAGTTGCTTCCGATGGATCACTGTTCACCTGGGgtaagttctg ... atgcaatcagGTGCTAATGAGTTTGGCCAGTTGGGAGATGGGACAGAGGACAGCGCGAAAG
EST: gi|211019672|gb|FL390358.1|FL390358
EST:     CCGTGAGCATACCGCTGCAGTTGCTTCCGATGGATCACTGTTCACCTGGG                         GNGCTAATGAGTTTGGCCAGTTGGGAGATGGG
genomic: CCGTGAGCATACCGCTGCAGTTGCTTCCGATGGATCACTGTTCACCTGGGgtaagttctg ... atgcaatcagGTGCTAATGAGTTTGGCCAGTTGGGAGATGGG
EST: gi|31663993|gb|CD573173.1|CD573173
EST:     CCGTGAGCATACCGCTGCAGTTGCTTCCGATGGATCACTGTTCACCTGGG                         GTGCTAATGAGTTTGGCCAGTTGGGAGATGGGACAGAGGACAGCGCGAAAG
genomic: CCGTGAGCATACCGCTGCAGTTGCTTCCGATGGATCACTGTTCACCTGGGgtaagttctg ... atgcaatcagGTGCTAATGAGTTTGGCCAGTTGGGAGATGGGACAGAGGACAGCGCGAAAG
EST: gi|76930470|gb|DV172399.1|DV172399
EST:     CCGTGAGCATACCGCTGCAGTTGCTTCCGATGGATCACTGTTCACCTGGG                         GTGCTAATGAGTTTGGCCAGTTGGGAGATGGGACAGAGGACAGCGCGAAAG
genomic: CCGTGAGCATACCGCTGCAGTTGCTTCCGATGGATCACTGTTCACCTGGGgtaagttctg ... atgcaatcagGTGCTAATGAGTTTGGCCAGTTGGGAGATGGGACAGAGGACAGCGCGAAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTCAAATTGGGGAATGGGAAGAGCCTCAGGTGGACCGATATTGCATGTGGCCGTGAGCATACCGCTGCAGTTGCTTCCGATGGATCACTGTTCACCTGGGgtaagttctgcacacttcgttcgaatacgtgcatgttagagtgccaaaaaaattaaatatagtttagatgagagaactaacaccttaattgcaatgttgt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA