1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TTCAAATTGGGGAATGGGAAGAGCCTCAGGTGGACCGATATTGCATGTGGCCGTGAGCATACCGCTGCAGTTGCTTCCGATGGATCACTGTTCACCTGGGgtaagttctgcacacttcgttcgaatacgtgcatgttagagtgccaaaaaaattaaatatagtttagatgagagaactaacaccttaattgcaatgttgt...
species | Zea mays |
transcript | GRMZM2G074024_T02 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CCGTGAGCATACCGCTGCAGTTGCTTCCGATGGATCACTGTTCACCTGGG GTGCTAATGAGTTTGGCCAGTTGGGAGATGGGACAGAGGACAGCGCGAAAGEST: gi|211129102|gb|FL371420.1|FL371420
genomic: CCGTGAGCATACCGCTGCAGTTGCTTCCGATGGATCACTGTTCACCTGGGgtaagttctg ... atgcaatcagGTGCTAATGAGTTTGGCCAGTTGGGAGATGGGACAGAGGACAGCGCGAAAG
EST: CCGTGAGCATACCGCTGCAGTTGCTTCCGATGGATCACTGTTCACCTGGG GTGCTAATGAGTTTGGCCAGTTGGGAGATGGGACAGAGGACAGCGCGAAAGEST: gi|29543619|gb|CB603999.1|CB603999
genomic: CCGTGAGCATACCGCTGCAGTTGCTTCCGATGGATCACTGTTCACCTGGGgtaagttctg ... atgcaatcagGTGCTAATGAGTTTGGCCAGTTGGGAGATGGGACAGAGGACAGCGCGAAAG
EST: CCGTGAGCATACCGCTGCAGTTGCTTCCGATGGATCACTGTTCACCTGGG GTGCTAATGAGTTTGGCCAGTTGGGAGATGGGACAGAGGACAGCGCGAAAGEST: gi|211158187|gb|FL395436.1|FL395436
genomic: CCGTGAGCATACCGCTGCAGTTGCTTCCGATGGATCACTGTTCACCTGGGgtaagttctg ... atgcaatcagGTGCTAATGAGTTTGGCCAGTTGGGAGATGGGACAGAGGACAGCGCGAAAG
EST: CCGTGAGCATACCGCTGCAGTTGCTTCCGATGGATCACTGTTCACCTGGG GTGCTAATGAGTTTGGCCAGTTGGGAGATGGGACAGAGGACAGCGCGAAAGEST: gi|78112813|gb|DV531207.1|DV531207
genomic: CCGTGAGCATACCGCTGCAGTTGCTTCCGATGGATCACTGTTCACCTGGGgtaagttctg ... atgcaatcagGTGCTAATGAGTTTGGCCAGTTGGGAGATGGGACAGAGGACAGCGCGAAAG
EST: CCGTGAGCATACCGCTGCAGTTGCTTCCGATGGATCACTGTTCACCTGGG GTGCTAATGAGTTTGGCCAGTTGGGAGATGGGACAGAGGACAGCGCGAAAGEST: gi|211019672|gb|FL390358.1|FL390358
genomic: CCGTGAGCATACCGCTGCAGTTGCTTCCGATGGATCACTGTTCACCTGGGgtaagttctg ... atgcaatcagGTGCTAATGAGTTTGGCCAGTTGGGAGATGGGACAGAGGACAGCGCGAAAG
EST: CCGTGAGCATACCGCTGCAGTTGCTTCCGATGGATCACTGTTCACCTGGG GNGCTAATGAGTTTGGCCAGTTGGGAGATGGGEST: gi|31663993|gb|CD573173.1|CD573173
genomic: CCGTGAGCATACCGCTGCAGTTGCTTCCGATGGATCACTGTTCACCTGGGgtaagttctg ... atgcaatcagGTGCTAATGAGTTTGGCCAGTTGGGAGATGGG
EST: CCGTGAGCATACCGCTGCAGTTGCTTCCGATGGATCACTGTTCACCTGGG GTGCTAATGAGTTTGGCCAGTTGGGAGATGGGACAGAGGACAGCGCGAAAGEST: gi|76930470|gb|DV172399.1|DV172399
genomic: CCGTGAGCATACCGCTGCAGTTGCTTCCGATGGATCACTGTTCACCTGGGgtaagttctg ... atgcaatcagGTGCTAATGAGTTTGGCCAGTTGGGAGATGGGACAGAGGACAGCGCGAAAG
EST: CCGTGAGCATACCGCTGCAGTTGCTTCCGATGGATCACTGTTCACCTGGG GTGCTAATGAGTTTGGCCAGTTGGGAGATGGGACAGAGGACAGCGCGAAAG
genomic: CCGTGAGCATACCGCTGCAGTTGCTTCCGATGGATCACTGTTCACCTGGGgtaagttctg ... atgcaatcagGTGCTAATGAGTTTGGCCAGTTGGGAGATGGGACAGAGGACAGCGCGAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCAAATTGGGGAATGGGAAGAGCCTCAGGTGGACCGATATTGCATGTGGCCGTGAGCATACCGCTGCAGTTGCTTCCGATGGATCACTGTTCACCTGGGgtaagttctgcacacttcgttcgaatacgtgcatgttagagtgccaaaaaaattaaatatagtttagatgagagaactaacaccttaattgcaatgttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA