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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttcacttgcactgttctatctctctgtctattggtttaatggttgcactgctctgcttgtttgttgttgtgcttatcttttattcatcataatcaaccagGGCCATGGATGTAGATGATGTGCTCAGTAACTTGCGTGTTGTTGGTGTGCCAACAAAGAGTGCAATTTACATATGGGGTTATAACCACAGTGGCCAGACT

Basic information

species Zea mays
transcript GRMZM2G074024_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G074024_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os03g40260.1 (Oryza sativa), 3'ss of exon 1
ttcacttgcactgttctatctctctgtctattggtttaatggttgcactgc-tctgcttgtttg-ttgttgtgcttatcttttattcat--cataatcaaccagGGCCATGGATGTAGATGATGTGCTCAGTAACTTGCGTGTTGTTGGTGTGCCAACAAAGAGTGCAATTTACATATGGGGTTATAACCACAGTGGCCAGACT-
    ||     ||    || |    ||   || |     |  |    || |  ||||||||||| |||    |||  || | ||| |||  | ||| ||| |||| | |||||| | |||||| ||||| ||  | |||||||||  || ||||| || ||||| ||||||||| ||||||| |||||||||||||| |||||  
----ctaaagatgcatcatatggtagttcgttcgcactgtaatgttgcttcgcctgcttgtttgattgagtggctcttcctgtatgcatgtcctaaacaaacagG-CAATGGATATGGATGATATGCTCGGTGGCCTGCGTGTTGCCGGAGTGCCGACCAAGAGCGCAATTTACTTATGGGGGTATAACCACAGTGGGCAGACGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211081940|gb|FL387342.1|FL387342
EST:     GAATCCGCCCGAAGTCTGCCCCGCTCTTCGGCCTCGTCCCTTCTCTCCAG                         GGCCATGGATGTAGATGATGTGCTCAGTAACTTGCGTGTTGTTGGTGTGCC
genomic: GAATCCGCCCGAAGTCTGCCCCGCTCTTCGGCCTCGTCCCTTCTCTCCAGgtgagcgctg ... aatcaaccagGGCCATGGATGTAGATGATGTGCTCAGTAACTTGCGTGTTGTTGGTGTGCC
EST: gi|91872846|gb|EB402803.1|EB402803
EST:     GAATCCGCCCGAAGTCTGCCCCGCTCTTCGGCCTCGTCCCTTCTCTCCAG                         GGCCATGGATGTAGATGATGTGCTCAGTAACTTGCGTGTTGTTGGTGTGCC
genomic: GAATCCGCCCGAAGTCTGCCCCGCTCTTCGGCCTCGTCCCTTCTCTCCAGgtgagcgctg ... aatcaaccagGGCCATGGATGTAGATGATGTGCTCAGTAACTTGCGTGTTGTTGGTGTGCC
EST: gi|71420798|gb|DR805186.1|DR805186
EST:     GAATCCGCCCGAAGTCTGCCCCGCTCTTCGGCCTCGTCCCTTCTCTCCAG                         GGCCATGGATGTAGATGATGTGCTCAGTAACTTGCGTGTTGTTGGTGTGCC
genomic: GAATCCGCCCGAAGTCTGCCCCGCTCTTCGGCCTCGTCCCTTCTCTCCAGgtgagcgctg ... aatcaaccagGGCCATGGATGTAGATGATGTGCTCAGTAACTTGCGTGTTGTTGGTGTGCC
EST: gi|211305390|gb|FL411424.1|FL411424
EST:     GAATCCGCCCGAAGTCTGCCCCGCTCTTCGGCCTCGTCCCTTCTCTCCAG                         GGCCATGGATGTAGATGATGTGCTCAGTAACTTGCGTGTTGTTGGTGTGCC
genomic: GAATCCGCCCGAAGTCTGCCCCGCTCTTCGGCCTCGTCCCTTCTCTCCAGgtgagcgctg ... aatcaaccagGGCCATGGATGTAGATGATGTGCTCAGTAACTTGCGTGTTGTTGGTGTGCC
EST: gi|211129102|gb|FL371420.1|FL371420
EST:     GAATCCGCCCGAAGTCTGCCCCGCTCTTCGGCCTCGTCCCTTCTCTCCAG                         GGCCATGGATGTAGATGATGTGCTCAGTAACTTGCGTGTTGTTGGTGTGCC
genomic: GAATCCGCCCGAAGTCTGCCCCGCTCTTCGGCCTCGTCCCTTCTCTCCAGgtgagcgctg ... aatcaaccagGGCCATGGATGTAGATGATGTGCTCAGTAACTTGCGTGTTGTTGGTGTGCC
EST: gi|211432003|gb|FL420683.1|FL420683
EST:     GAATCCGCCCGAAGTCTGCCCCGCTCTTCGGCCTCGTCCCTTCTCTCCAG                         GGCCATGGATGTAGATGATGTGCTCAGTAACTTGCGTGTTGTTGGTGTGCC
genomic: GAATCCGCCCGAAGTCTGCCCCGCTCTTCGGCCTCGTCCCTTCTCTCCAGgtgagcgctg ... aatcaaccagGGCCATGGATGTAGATGATGTGCTCAGTAACTTGCGTGTTGTTGGTGTGCC
EST: gi|29543619|gb|CB603999.1|CB603999
EST:     CCTTCTCTCCAG                         GGCCATGGATGTAGATGATGTGCTCAGTAACTTGCGTGTTGTTGGTGTGCC
genomic: CCTTCTCTCCAGgtgagcgctg ... aatcaaccagGGCCATGGATGTAGATGATGTGCTCAGTAACTTGCGTGTTGTTGGTGTGCC
EST: gi|211158187|gb|FL395436.1|FL395436
EST:     GAATCCGCCCGAAGTCTGCCCCGCTCTTCGGCCTCGTCCCTTCTCTCCAG                         GGCCATGGATGTAGATGATGTGCTCAGTAACTTGCGTGTTGTTGGTGTGCC
genomic: GAATCCGCCCGAAGTCTGCCCCGCTCTTCGGCCTCGTCCCTTCTCTCCAGgtgagcgctg ... aatcaaccagGGCCATGGATGTAGATGATGTGCTCAGTAACTTGCGTGTTGTTGGTGTGCC
EST: gi|78112813|gb|DV531207.1|DV531207
EST:     GTCTGCCCCGCTCTTCGGCCTCGTCCCTTCTCTCCAG                         GGCCATGGATGTAGATGATGTGCTCAGTAACTTGCGTGTTGTTGGTGTGCC
genomic: GTCTGCCCCGCTCTTCGGCCTCGTCCCTTCTCTCCAGgtgagcgctg ... aatcaaccagGGCCATGGATGTAGATGATGTGCTCAGTAACTTGCGTGTTGTTGGTGTGCC
EST: gi|211019672|gb|FL390358.1|FL390358
EST:     GAATCCGCCCAAAGTCTGCCCCGCTCTTCGGCCTCGTCCCTTCTCTCCAG                         GGCCATGGATGTAGATGATGTGCTCAGTAACTTGCGTGTTGTTGGTGTGCC
genomic: GAATCCGCCCGAAGTCTGCCCCGCTCTTCGGCCTCGTCCCTTCTCTCCAGgtgagcgctg ... aatcaaccagGGCCATGGATGTAGATGATGTGCTCAGTAACTTGCGTGTTGTTGGTGTGCC
EST: gi|211204474|gb|FL397884.1|FL397884
EST:     GAATCCGCCCGAAGTCTGCCCCGCTCTTCGGCCTCGTCCCTTCTCTCCAG                         GGCCATGGATGTAGATGATGTGCTCAGTAACTTGCGTGTTGTTGGTGTGCC
genomic: GAATCCGCCCGAAGTCTGCCCCGCTCTTCGGCCTCGTCCCTTCTCTCCAGgtgagcgctg ... aatcaaccagGGCCATGGATGTAGATGATGTGCTCAGTAACTTGCGTGTTGTTGGTGTGCC
EST: gi|76930470|gb|DV172399.1|DV172399
EST:     GAATCCGCCCGAAGTCTGCCCCGCTCTTCGGCCTCGTCCCTTCTCTCCAG                         GGCCATGGATGTAGATGATGTGCTCAGTAACTTGCGTGTTGTTGGTGTGCC
genomic: GAATCCGCCCGAAGTCTGCCCCGCTCTTCGGCCTCGTCCCTTCTCTCCAGgtgagcgctg ... aatcaaccagGGCCATGGATGTAGATGATGTGCTCAGTAACTTGCGTGTTGTTGGTGTGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cactgctctgcttgtttgttgttgtgcttatcttttattcatcataatcaaccagGGCCATGGATGTAGATGATGTGCTCAGTAACTTGCGTGTTGTTGGTGTGCCAACAAAGAGTGCAATTTACATATGGGGTTATAACCACAGTGGCCAGACT
                           ttatcttttattcatc  TA-rich tract