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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTATCCTGTGGCGCACATTGTACAGCTGCCGTCGCTGAGCCTCGAGAAAACGATGGCACGGTATCGAAAAGCAGGCTTTGGGTTTGGGGACAAAATCAGgtttgctgcaataatttttcactgggtcaacaatccttgagaaattaatacaatctattcaattaaatattcactatagcatgctttttacag

Basic information

species Zea mays
transcript GRMZM2G074024_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G074024_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os03g40260.1 (Oryza sativa), 5'ss of exon 3
AGTATCCTGTGGCGCACATTGTACAGCTGCCGTCGCTGAGCCTCGAGAAAACGATGGCACGGTATCGAAAAGCAGGCTTTGGGTTTGGGGACAAAATCAGgtttgctgcaataatttttcactgggtcaacaatccttgagaaattaatacaatctattcaattaaatattcacta-tagcatgctttttacag
||| |||||||| ||||||||||||||||| || ||||| |||||||||||| |||||||  |||| | ||| ||||| ||||| |||||||||||||||||||||  |    ||  || ||||   ||| |     || |  || |   |||| |||| ||| |||||||||  | | ||    |   | |||
AGTGTCCTGTGGAGCACATTGTACAGCTGCTGTTGCTGAACCTCGAGAAAACAATGGCACTATATCAAGAAGTAGGCTCTGGGTCTGGGGACAAAATCAGgtttgcccctcatatgatt-actgt-ccaata-----tgtgtgatcag--caatttatttaataaaatattcagcacttgcggtatccatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71420798|gb|DR805186.1|DR805186
EST:     ACGATGGCACGGTATCGAAAAGCAGGCTTTGGGTTTGGGGACAAAATCAG                         GGTTCAGATTACCCTCGTCTATTTTGGGGAGCTTTCACACCAAACACG
genomic: ACGATGGCACGGTATCGAAAAGCAGGCTTTGGGTTTGGGGACAAAATCAGgtttgctgca ... ctttttacagGGTTCAGATTACCCTCGTCTATTTTGGGGAGCTTTCACACCAAACACG
EST: gi|211129102|gb|FL371420.1|FL371420
EST:     ACGATGGCACGGTATCGAAAAGCAGGCTTTGGGTTTGGGGACAAAATCAG                         GGTTCAGATTACCCTCGTCTATTTTGGGAAGCTTTCCCACCAAACACG
genomic: ACGATGGCACGGTATCGAAAAGCAGGCTTTGGGTTTGGGGACAAAATCAGgtttgctgca ... ctttttacagGGTTCAGATTACCCTCGTCTATTTTGGGGAGCTTTCACACCAAACACG
EST: gi|29543619|gb|CB603999.1|CB603999
EST:     ACGATGGCACGGTATCGAAAAGCAGGCTTTGGGTTTGGGGACAAAATCAG                         GGTTCAGATTACCCTCGTCTATTTTGGGGAGCTTTCACACCAAACACG
genomic: ACGATGGCACGGTATCGAAAAGCAGGCTTTGGGTTTGGGGACAAAATCAGgtttgctgca ... ctttttacagGGTTCAGATTACCCTCGTCTATTTTGGGGAGCTTTCACACCAAACACG
EST: gi|78112813|gb|DV531207.1|DV531207
EST:     ACGATGGCACGGTATCGAAAAGCAGGCTTTGGGTTTGGGGACAAAATCAG                         GGTTCAGATTACCCTCGTCTATTTTGGGGAGCTTTCACACCAAACACG
genomic: ACGATGGCACGGTATCGAAAAGCAGGCTTTGGGTTTGGGGACAAAATCAGgtttgctgca ... ctttttacagGGTTCAGATTACCCTCGTCTATTTTGGGGAGCTTTCACACCAAACACG
EST: gi|31663993|gb|CD573173.1|CD573173
EST:     ACGATGGCACGGTATCGAAAAGCAGGCTTTGGGTTTGGGGACAAAATCAG                         GGTTCAGATTACCCTCGTCTATTTTGGGGAGCTTTCACACCAAACACG
genomic: ACGATGGCACGGTATCGAAAAGCAGGCTTTGGGTTTGGGGACAAAATCAGgtttgctgca ... ctttttacagGGTTCAGATTACCCTCGTCTATTTTGGGGAGCTTTCACACCAAACACG
EST: gi|76930470|gb|DV172399.1|DV172399
EST:     ACGATGGCACGGTATCGAAAAGCAGGCTTTGGGTTTGGGGACAAAATCAG                         GGTTCAGATTACCCCTCGTCTATTTTGGGGAGCTTTCACACCAAACACG
genomic: ACGATGGCACGGTATCGAAAAGCAGGCTTTGGGTTTGGGGACAAAATCAGgtttgctgca ... ctttttacagGGTTCAGATTACCC-TCGTCTATTTTGGGGAGCTTTCACACCAAACACG