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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccataaaatcccttgactttattttgtacccacaataatagttactgcttttggaatgccagtttgtttgttttggatatgtatttgtttctgt...

Basic information

species Zea mays
transcript GRMZM2G069174_T04
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|93017315|gb|EB642835.1|EB642835
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|32837285|gb|CD976963.1|CD976963
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|50329789|gb|CO524915.1|CO524915
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|71756547|gb|DR954484.1|DR954484
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|89247221|gb|DY619007.1|DY619007
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|149015207|gb|EE044991.2|EE044991
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|76014651|gb|DT941821.1|DT941821
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|93283657|gb|EB675921.1|EB675921
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|78080542|gb|DV508954.1|DV508954
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|71429865|gb|DR810915.1|DR810915
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|86472990|gb|DY239360.1|DY239360
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|88747131|gb|DY531272.1|DY531272
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|89251527|gb|DY623313.1|DY623313
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|22715613|gb|BU197864.1|BU197864
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|148977171|gb|EE026014.2|EE026014
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|84970145|gb|DW468495.1|DW468495
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|76015058|gb|DT942228.1|DT942228
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|91872802|gb|EB402759.1|EB402759
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|78089991|gb|DV518365.1|DV518365
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|76925262|gb|DV170349.1|DV170349
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|71763868|gb|DR961805.1|DR961805
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|21809923|gb|BQ668241.1|BQ668241
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGG-GGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|78108923|gb|DV527340.1|DV527340
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|71762173|gb|DR960110.1|DR960110
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|76287741|gb|DV027309.1|DV027309
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCG--                         -CGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|37425821|gb|CF650659.1|CF650659
EST:     TGGTGAGCGGCAATCCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         CCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|50324319|gb|CO519445.1|CO519445
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|78109548|gb|DV527964.1|DV527964
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|23357551|gb|BU645200.1|BU645200
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|33092963|gb|CF052957.1|CF052957
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|93282342|gb|EB674606.1|EB674606
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|78092220|gb|DV520594.1|DV520594
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|33467080|gb|CF244129.1|CF244129
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|94479305|gb|EB708263.1|EB708263
EST:     TGGTGAGCGGCAATGCTTTGTGGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|149013312|gb|EE042897.2|EE042897
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|211347561|gb|FL462321.1|FL462321
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|50332319|gb|CO527445.1|CO527445
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|71758124|gb|DR956061.1|DR956061
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|38687433|gb|CK144464.1|CK144464
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|71763726|gb|DR961663.1|DR961663
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|22521297|gb|BU080108.1|BU080108
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|149089359|gb|EE178597.2|EE178597
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|93284250|gb|EB676514.1|EB676514
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|149097086|gb|EE182893.2|EE182893
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|149090691|gb|EE180018.2|EE180018
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|71299812|gb|DR785918.1|DR785918
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|101386772|gb|EB815403.1|EB815403
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|87157178|gb|DY401967.1|DY401967
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|32838206|gb|CD977884.1|CD977884
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGAATAATGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|89249460|gb|DY621246.1|DY621246
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|149001129|gb|EE038389.2|EE038389
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|32839224|gb|CD978905.1|CD978905
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|50337376|gb|CO532502.1|CO532502
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|71308293|gb|DR790381.1|DR790381
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|71760109|gb|DR958046.1|DR958046
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|32838606|gb|CD978284.1|CD978284
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|32838442|gb|CD978120.1|CD978120
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|84969571|gb|DW468004.1|DW468004
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|71774454|gb|DR972332.1|DR972332
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|74246261|gb|DT654175.1|DT654175
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|148949615|gb|EC895086.2|EC895086
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|148949612|gb|EC895083.2|EC895083
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|93282822|gb|EB675086.1|EB675086
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|88757281|gb|DY541422.1|DY541422
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCAAGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAAT
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGC--G-G-TGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAAT
EST: gi|91869562|gb|EB400438.1|EB400438
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|71310292|gb|DR791438.1|DR791438
EST:     TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTG                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccat ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCGTGgcaagtccataaaatcccttgactttattttgtacccacaataatagttactgcttttggaatgccagtttgtttgttttggatatgtatttgtttctgt

- - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - AAGAGA