1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagctcaccgtcccccgatccggccgccgccggggccgacctcgcccgctggatccgcgctgactcgattcgtgcaccgtgcttggccgcggccctcctcttgttatgtgcagGTGGGCAACGCCTTCGTGCATCAGTACTACAACATCTTGCACCAGTCGCCGGAGCTCGTCTACCGCTTCTACCAGGAGGCCAGCTGCCTCGGGCGCCCCG
species | Zea mays |
transcript | GRMZM2G069174_T04 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGCCCCCTGCCGCAGCCGCGGCATGTGGAGCTCCGCCGCCGGCACAAGTG GTGGGCAACGCCTTCGTGCATCAGTACTACAACATCTTGCACCAGTCGCCGEST: gi|211305900|gb|FL324273.1|FL324273
genomic: CGCCCCCTGCCGCAGCCGCGGCATCTGGAGCTCCGCCGCCGGCACAAGTGgtaagctcac ... ttatgtgcagGTGGGCAACGCCTTCGTGCATCAGTACTACAACATCTTGCACCAGTCGCCG
EST: CGCCCCCTGCCGCAGCCGCGGCATCTGGAGCTCCGCCGCCGGCACAAGTG GTGGGCAACGCCTTCGTGCATCAGTACTACAACATCTTGCACCAGTCGCCGEST: gi|37425819|gb|CF650658.1|CF650658
genomic: CGCCCCCTGCCGCAGCCGCGGCATCTGGAGCTCCGCCGCCGGCACAAGTGgtaagctcac ... ttatgtgcagGTGGGCAACGCCTTCGTGCATCAGTACTACAACATCTTGCACCAGTCGCCG
EST: CGCCCCCTGCCGCAGCCGCGGCATCTGGAGCTCCGCCGCCGGCACAAGTG GTGGGCAACGCCTTCGTGCATCAGTACTACAACATCTTGCACCAGTCGCCGEST: gi|78109549|gb|DV527965.1|DV527965
genomic: CGCCCCCTGCCGCAGCCGCGGCATCTGGAGCTCCGCCGCCGGCACAAGTGgtaagctcac ... ttatgtgcagGTGGGCAACGCCTTCGTGCATCAGTACTACAACATCTTGCACCAGTCGCCG
EST: CGCCCCCTGCCGCAGCCGCGGCATCTGGAGCTCCGCCGCCGGCACAAGTG GTGGGCAACGCCTTCCTGCATCAGTACTACAACATCTTGCACCAGTCGCCGEST: gi|149015208|gb|EE044992.2|EE044992
genomic: CGCCCCCTGCCGCAGCCGCGGCATCTGGAGCTCCGCCGCCGGCACAAGTGgtaagctcac ... ttatgtgcagGTGGGCAACGCCTTCGTGCATCAGTACTACAACATCTTGCACCAGTCGCCG
EST: CGCCCCCTGCCGCAGCCGCGGCATCTGGAGCTCCGCCGCCGGCACAAGTG GTGGGCAACGCCTTCGTGCATCAGTACTACAACATCTTGCACCAGTCGCCGEST: gi|50337377|gb|CO532503.1|CO532503
genomic: CGCCCCCTGCCGCAGCCGCGGCATCTGGAGCTCCGCCGCCGGCACAAGTGgtaagctcac ... ttatgtgcagGTGGGCAACGCCTTCGTGCATCAGTACTACAACATCTTGCACCAGTCGCCG
EST: CGCCCCCTGCCGCAGCCGCGGCATCTGGAGCTCCGCCGCCGGCACAAGTG GTGGGCAACGCCTTCGTGCATCAGTACTACAACATCTTGCACCAGTCGCCGEST: gi|89249461|gb|DY621247.1|DY621247
genomic: CGCCCCCTGCCGCAGCCGCGGCATCTGGAGCTCCGCCGCCGGCACAAGTGgtaagctcac ... ttatgtgcagGTGGGCAACGCCTTCGTGCATCAGTACTACAACATCTTGCACCAGTCGCCG
EST: CGCCCCCTGCCGCAGCCGCGGCATCTGGAGCTCCGCCGCCGGCACAAGTG GTGGGCAACGCCTTCGTGCATCAGTACTACAACATCTTGCACCAGTCGCCGEST: gi|88752993|gb|DY537134.1|DY537134
genomic: CGCCCCCTGCCGCAGCCGCGGCATCTGGAGCTCCGCCGCCGGCACAAGTGgtaagctcac ... ttatgtgcagGTGGGCAACGCCTTCGTGCATCAGTACTACAACATCTTGCACCAGTCGCCG
EST: CGCCCCCTGCCGCAGCCGCGGCATCTGGAGCTCCGCCGCCGGCACAAGTG GTGGGCAACGCCTTCGTGCATCAGTACTACAACATCTTGCACCAGTCGCCGEST: gi|101391403|gb|EB817636.1|EB817636
genomic: CGCCCCCTGCCGCAGCCGCGGCATCTGGAGCTCCGCCGCCGGCACAAGTGgtaagctcac ... ttatgtgcagGTGGGCAACGCCTTCGTGCATCAGTACTACAACATCTTGCACCAGTCGCCG
EST: CGCCCCCTGCCGCAGCCGCGGCATCTGGAGCTCCGCCGCCGGCACAAGTG GTGGGCAACGCCTTCGTGCATCAGTACTACAACATCTTGCACCAGTCGCCGEST: gi|71310294|gb|DR791439.1|DR791439
genomic: CGCCCCCTGCCGCAGCCGCGGCATCTGGAGCTCCGCCGCCGGCACAAGTGgtaagctcac ... ttatgtgcagGTGGGCAACGCCTTCGTGCATCAGTACTACAACATCTTGCACCAGTCGCCG
EST: CGCCCCCTGCCGCAGCCGCGGCATCTGGAGCTCCGCCGCCGGCACAAGTG GTGGGCAACGCCTTCGTGCATCAGTACTACAACATCTTGCACCAGTCGCCGEST: gi|33467081|gb|CF244130.1|CF244130
genomic: CGCCCCCTGCCGCAGCCGCGGCATCTGGAGCTCCGCCGCCGGCACAAGTGgtaagctcac ... ttatgtgcagGTGGGCAACGCCTTCGTGCATCAGTACTACAACATCTTGCACCAGTCGCCG
EST: CGCCCCCTGCCGCAGCCGCGGCATCTGGAGCTCCGCCGCCGGCACAAGTG GTGGGCAACGCCTTCGTGCATCAGTACTACAACATCTTGCACCAGTCGCCGEST: gi|50324320|gb|CO519446.1|CO519446
genomic: CGCCCCCTGCCGCAGCCGCGGCATCTGGAGCTCCGCCGCCGGCACAAGTGgtaagctcac ... ttatgtgcagGTGGGCAACGCCTTCGTGCATCAGTACTACAACATCTTGCACCAGTCGCCG
EST: CGCCCCCTGCCGCAGCCGCGGCATCTGGAGCTCCGCCGCCGGCACAAGTG GTGGGCAACGCCTTCGTGCATCAGTACTACAACATCTTGCACCAGTCGCCGEST: gi|211216044|gb|FL339267.1|FL339267
genomic: CGCCCCCTGCCGCAGCCGCGGCATCTGGAGCTCCGCCGCCGGCACAAGTGgtaagctcac ... ttatgtgcagGTGGGCAACGCCTTCGTGCATCAGTACTACAACATCTTGCACCAGTCGCCG
EST: CCCCCTGCCGCAGCCGCG--ATTNCTGGAGCTCCGCCGCCGGCACAAGTG GTGGGCAACGC-TTCGTGCATCAGTACTACAACATCTTGCACCAGTCGCCGEST: gi|89756695|gb|DY686633.1|DY686633
genomic: CCCCCTGCCGCAGCCGCGGCAT--CTGGAGCTCCGCCGCCGGCACAAGTGgtaagctcac ... ttatgtgcagGTGGGCAACGCCTTCGTGCATCAGTACTACAACATCTTGCACCAGTCGCCG
EST: CGCCCCCTGCCGCAGCCGCGGCATCTGGAGCTCCGCCGCCGGCACAAGTG GTGGGCAACGCCTTCGTGCATCAGTACTACAACATCTTGCACCAGTCGCCGEST: gi|50329790|gb|CO524916.1|CO524916
genomic: CGCCCCCTGCCGCAGCCGCGGCATCTGGAGCTCCGCCGCCGGCACAAGTGgtaagctcac ... ttatgtgcagGTGGGCAACGCCTTCGTGCATCAGTACTACAACATCTTGCACCAGTCGCCG
EST: CGCCCCCTGCCGCAGCCGCGGCATCTGGAGCTCCGCCGCCGGCACAAGTG GTGGGCAACGCCTTCGTGCATCAGTACTACAACATCTTGCACCAGTCGCCG
genomic: CGCCCCCTGCCGCAGCCGCGGCATCTGGAGCTCCGCCGCCGGCACAAGTGgtaagctcac ... ttatgtgcagGTGGGCAACGCCTTCGTGCATCAGTACTACAACATCTTGCACCAGTCGCCG
gctgactcgattcgtgcaccgtgcttggccgcggccctcctcttgttatgtgcagGTGGGCAACGCCTTCGTGCATCAGTACTACAACATCTTGCACCAGTCGCCGGAGCTCGTCTACCGCTTCTACCAGGAGGCCAGCTGCCTCGGGCGCCCCG
cgctgac putative branch site (score: 3)
ccctcctcttgttat putative PPT
ttgttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagctcaccgtcccccgatccggccgccgccggggccgacctcgcccgctggatccgcgctgactcgattcgtgcaccgtgcttggccgcggccctcctcttgttatgtgcagGTGGGCAACGCCTTCGTGCATCAGTACTACAACATCTTGCACCAGTCGCCGGAGCTCGTCTACCGCTTCTACCAGGAGGCCAGCTGCCTCGGGCGCCCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC