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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCCAAGGGTTTTGCTATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAGgtattaatcttacattttactcaggttgttctatgatataaggtataggtagttaatctaattttatgaatgccctgttctcatgtcagtttgtttttaa...

Basic information

species Zea mays
transcript GRMZM2G069174_T04
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|93017315|gb|EB642835.1|EB642835
EST:     ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAG                         GCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
genomic: ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAGgtattaatct ... ttgattgcagGCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
EST: gi|32837285|gb|CD976963.1|CD976963
EST:     ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAG                         GCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
genomic: ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAGgtattaatct ... ttgattgcagGCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
EST: gi|50329789|gb|CO524915.1|CO524915
EST:     ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAG                         GCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
genomic: ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAGgtattaatct ... ttgattgcagGCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
EST: gi|71756547|gb|DR954484.1|DR954484
EST:     ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAG                         GCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
genomic: ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAGgtattaatct ... ttgattgcagGCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
EST: gi|89247221|gb|DY619007.1|DY619007
EST:     ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAG                         GCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
genomic: ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAGgtattaatct ... ttgattgcagGCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
EST: gi|149015207|gb|EE044991.2|EE044991
EST:     ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAG                         GCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
genomic: ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAGgtattaatct ... ttgattgcagGCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
EST: gi|76014651|gb|DT941821.1|DT941821
EST:     ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAG                         GCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
genomic: ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAGgtattaatct ... ttgattgcagGCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
EST: gi|93283657|gb|EB675921.1|EB675921
EST:     ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAG                         GCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
genomic: ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAGgtattaatct ... ttgattgcagGCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
EST: gi|78080542|gb|DV508954.1|DV508954
EST:     ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAG                         GCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
genomic: ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAGgtattaatct ... ttgattgcagGCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
EST: gi|71429865|gb|DR810915.1|DR810915
EST:     ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAG                         GCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
genomic: ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAGgtattaatct ... ttgattgcagGCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
EST: gi|86472990|gb|DY239360.1|DY239360
EST:     ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAG                         GCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
genomic: ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAGgtattaatct ... ttgattgcagGCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
EST: gi|88747131|gb|DY531272.1|DY531272
EST:     ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAG                         GCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
genomic: ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAGgtattaatct ... ttgattgcagGCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
EST: gi|89251527|gb|DY623313.1|DY623313
EST:     ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAG                         GCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
genomic: ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAGgtattaatct ... ttgattgcagGCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
EST: gi|22715613|gb|BU197864.1|BU197864
EST:     ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAG                         GCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
genomic: ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAGgtattaatct ... ttgattgcagGCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
EST: gi|148977171|gb|EE026014.2|EE026014
EST:     ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAG                         GCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
genomic: ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAGgtattaatct ... ttgattgcagGCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
EST: gi|84970145|gb|DW468495.1|DW468495
EST:     ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAG                         GCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
genomic: ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAGgtattaatct ... ttgattgcagGCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
EST: gi|76015058|gb|DT942228.1|DT942228
EST:     ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAG                         GCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
genomic: ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAGgtattaatct ... ttgattgcagGCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
EST: gi|91872802|gb|EB402759.1|EB402759
EST:     ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAG                         GCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
genomic: ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAGgtattaatct ... ttgattgcagGCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
EST: gi|78089991|gb|DV518365.1|DV518365
EST:     ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAG                         GCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
genomic: ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAGgtattaatct ... ttgattgcagGCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
EST: gi|76925262|gb|DV170349.1|DV170349
EST:     ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAG                         GCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
genomic: ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAGgtattaatct ... ttgattgcagGCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
EST: gi|71763868|gb|DR961805.1|DR961805
EST:     ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAG                         GCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
genomic: ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAGgtattaatct ... ttgattgcagGCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
EST: gi|21809923|gb|BQ668241.1|BQ668241
EST:     GAGGATGCCAGTGCAGTTCAAGCTGCAATAGAG                         GCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
genomic: GAGGATGCCAGTGCAGTTCAAGCTGCAATAGAGgtattaatct ... ttgattgcagGCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
EST: gi|78108923|gb|DV527340.1|DV527340
EST:     ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAG                         GCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
genomic: ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAGgtattaatct ... ttgattgcagGCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
EST: gi|71762173|gb|DR960110.1|DR960110
EST:     ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAG                         GCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
genomic: ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAGgtattaatct ... ttgattgcagGCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
EST: gi|76287741|gb|DV027309.1|DV027309
EST:     ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAG                         GCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
genomic: ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAGgtattaatct ... ttgattgcagGCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
EST: gi|37425821|gb|CF650659.1|CF650659
EST:     ATGGCTTTGTAGACTTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAG                         GCTTCTCCTGTTACTATTGGTGAGCGGCAATCCTTTGTCGAAGAGAAAAGG
genomic: ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAGgtattaatct ... ttgattgcagGCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
EST: gi|50324319|gb|CO519445.1|CO519445
EST:     ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAG                         GCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
genomic: ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAGgtattaatct ... ttgattgcagGCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
EST: gi|78109548|gb|DV527964.1|DV527964
EST:     ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAG                         GCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
genomic: ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAGgtattaatct ... ttgattgcagGCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
EST: gi|23357551|gb|BU645200.1|BU645200
EST:     ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAG                         GCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
genomic: ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAGgtattaatct ... ttgattgcagGCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
EST: gi|33092963|gb|CF052957.1|CF052957
EST:     ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAG                         GCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
genomic: ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAGgtattaatct ... ttgattgcagGCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
EST: gi|93282342|gb|EB674606.1|EB674606
EST:     ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAG                         GCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
genomic: ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAGgtattaatct ... ttgattgcagGCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
EST: gi|78092220|gb|DV520594.1|DV520594
EST:     ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAG                         GCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
genomic: ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAGgtattaatct ... ttgattgcagGCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
EST: gi|33467080|gb|CF244129.1|CF244129
EST:     ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAG                         GCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
genomic: ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAGgtattaatct ... ttgattgcagGCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
EST: gi|94479305|gb|EB708263.1|EB708263
EST:     ATGGCTTTGTAGAATTTGAGGATGGCAGTGCAGTTCAAGCTGCAATAGAG                         GCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTGGAAGAGAAAAGG
genomic: ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAGgtattaatct ... ttgattgcagGCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
EST: gi|149013312|gb|EE042897.2|EE042897
EST:     ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAG                         GCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
genomic: ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAGgtattaatct ... ttgattgcagGCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
EST: gi|211347561|gb|FL462321.1|FL462321
EST:     ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAG                         GCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
genomic: ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAGgtattaatct ... ttgattgcagGCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
EST: gi|50332319|gb|CO527445.1|CO527445
EST:     ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAG                         GCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
genomic: ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAGgtattaatct ... ttgattgcagGCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
EST: gi|71758124|gb|DR956061.1|DR956061
EST:     ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAG                         GCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
genomic: ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAGgtattaatct ... ttgattgcagGCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
EST: gi|38687433|gb|CK144464.1|CK144464
EST:     ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAG                         GCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
genomic: ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAGgtattaatct ... ttgattgcagGCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
EST: gi|71763726|gb|DR961663.1|DR961663
EST:     ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAG                         GCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
genomic: ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAGgtattaatct ... ttgattgcagGCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
EST: gi|22521297|gb|BU080108.1|BU080108
EST:     TTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAG                         GCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
genomic: TTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAGgtattaatct ... ttgattgcagGCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
EST: gi|149089359|gb|EE178597.2|EE178597
EST:     ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAG                         GCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
genomic: ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAGgtattaatct ... ttgattgcagGCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
EST: gi|93284250|gb|EB676514.1|EB676514
EST:     ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAG                         GCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
genomic: ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAGgtattaatct ... ttgattgcagGCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
EST: gi|149097086|gb|EE182893.2|EE182893
EST:     ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAG                         GCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
genomic: ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAGgtattaatct ... ttgattgcagGCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
EST: gi|149090691|gb|EE180018.2|EE180018
EST:     ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAG                         GCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
genomic: ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAGgtattaatct ... ttgattgcagGCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
EST: gi|71299812|gb|DR785918.1|DR785918
EST:     ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAG                         GCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
genomic: ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAGgtattaatct ... ttgattgcagGCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
EST: gi|101386772|gb|EB815403.1|EB815403
EST:     ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAG                         GCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
genomic: ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAGgtattaatct ... ttgattgcagGCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
EST: gi|87157178|gb|DY401967.1|DY401967
EST:     ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAG                         GCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
genomic: ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAGgtattaatct ... ttgattgcagGCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
EST: gi|32838206|gb|CD977884.1|CD977884
EST:     ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAG                         GCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
genomic: ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAGgtattaatct ... ttgattgcagGCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
EST: gi|89249460|gb|DY621246.1|DY621246
EST:     ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAG                         GCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
genomic: ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAGgtattaatct ... ttgattgcagGCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
EST: gi|149001129|gb|EE038389.2|EE038389
EST:     ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAG                         GCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
genomic: ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAGgtattaatct ... ttgattgcagGCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
EST: gi|32839224|gb|CD978905.1|CD978905
EST:     ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAG                         GCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
genomic: ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAGgtattaatct ... ttgattgcagGCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
EST: gi|50337376|gb|CO532502.1|CO532502
EST:     ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAG                         GCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
genomic: ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAGgtattaatct ... ttgattgcagGCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
EST: gi|71308293|gb|DR790381.1|DR790381
EST:     ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAG                         GCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
genomic: ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAGgtattaatct ... ttgattgcagGCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
EST: gi|71760109|gb|DR958046.1|DR958046
EST:     ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAG                         GCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
genomic: ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAGgtattaatct ... ttgattgcagGCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
EST: gi|32838606|gb|CD978284.1|CD978284
EST:     ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAG                         GCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
genomic: ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAGgtattaatct ... ttgattgcagGCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
EST: gi|32838442|gb|CD978120.1|CD978120
EST:     ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAG                         GCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
genomic: ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAGgtattaatct ... ttgattgcagGCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
EST: gi|84969571|gb|DW468004.1|DW468004
EST:     TGGC-TTGTAGGAATTGGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAG                         GCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
genomic: TGGCTTTGTA-GAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAGgtattaatct ... ttgattgcagGCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
EST: gi|71774454|gb|DR972332.1|DR972332
EST:     ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAG                         GCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
genomic: ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAGgtattaatct ... ttgattgcagGCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
EST: gi|74246261|gb|DT654175.1|DT654175
EST:     ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAG                         GCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
genomic: ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAGgtattaatct ... ttgattgcagGCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
EST: gi|148949615|gb|EC895086.2|EC895086
EST:     ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAG                         GCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
genomic: ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAGgtattaatct ... ttgattgcagGCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
EST: gi|148949612|gb|EC895083.2|EC895083
EST:     ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAG                         GCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
genomic: ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAGgtattaatct ... ttgattgcagGCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
EST: gi|93282822|gb|EB675086.1|EB675086
EST:     ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAG                         GCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
genomic: ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAGgtattaatct ... ttgattgcagGCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
EST: gi|88757281|gb|DY541422.1|DY541422
EST:     ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAG                         GCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
genomic: ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAGgtattaatct ... ttgattgcagGCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
EST: gi|91869562|gb|EB400438.1|EB400438
EST:     ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAG                         GCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
genomic: ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAGgtattaatct ... ttgattgcagGCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
EST: gi|71310292|gb|DR791438.1|DR791438
EST:     ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAG                         GCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG
genomic: ATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAGgtattaatct ... ttgattgcagGCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATCCAAGGGTTTTGCTATGGCTTTGTAGAATTTGAGGATGCCAGTGCAGTTCAAGCTGCAATAGAGgtattaatcttacattttactcaggttgttctatgatataaggtataggtagttaatctaattttatgaatgccctgttctcatgtcagtttgtttttaa

- - - - - - - - - - - - - - - -  GAGGAT
- - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGC