Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ccttctggtgaagaaatttttaggctttcttgttttgtgatgttagttgtgacttgtcacctgtgtagcattaagatgacatttttttgttatgctccagGTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGACCTGCACCCCCAATAACAGAGAAGCAAGCCTCTCCTGCCCCCACTCCAG

Basic information

species Zea mays
transcript GRMZM2G069174_T04
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|93017315|gb|EB642835.1|EB642835
EST:     CCCTCCTGTACCA-TGNAAGGAGGCACCAAAGAAGTCATATGCTTCAATT                         GTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
genomic: CCCTCCTGTACCATTG-AAGGAGGCACCAAAGAAGTCATATGCTTCAATTgtaagttttc ... tatgctccagGTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
EST: gi|89247221|gb|DY619007.1|DY619007
EST:     CCCCTCCTGTACCATTGAAGGAGGCACCAAAGAAGTCATATGCTTCAATT                         GTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
genomic: CCCCTCCTGTACCATTGAAGGAGGCACCAAAGAAGTCATATGCTTCAATTgtaagttttc ... tatgctccagGTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
EST: gi|76014651|gb|DT941821.1|DT941821
EST:     CCCCTCCTGTACCATTGAAGGAGGCACCAAAGAAGTCATATGCTTCAATT                         GTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
genomic: CCCCTCCTGTACCATTGAAGGAGGCACCAAAGAAGTCATATGCTTCAATTgtaagttttc ... tatgctccagGTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
EST: gi|93283657|gb|EB675921.1|EB675921
EST:     ATTGAA-GAGGCCACCAAAGAAGTCATATGCTTCAATG                         GTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
genomic: ATTGAAGGAGG-CACCAAAGAAGTCATATGCTTCAATTgtaagttttc ... tatgctccagGTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
EST: gi|78080542|gb|DV508954.1|DV508954
EST:     CCCCTCCTGTACCATTGAAGGAGGCACCAAAGAAGTCATATGCTTCAATT                         GTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
genomic: CCCCTCCTGTACCATTGAAGGAGGCACCAAAGAAGTCATATGCTTCAATTgtaagttttc ... tatgctccagGTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
EST: gi|71429865|gb|DR810915.1|DR810915
EST:     CCCCTCCTGTACCATTGAAGGAGGCACCAAAGAAGTCATATGCTTCAATT                         GTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
genomic: CCCCTCCTGTACCATTGAAGGAGGCACCAAAGAAGTCATATGCTTCAATTgtaagttttc ... tatgctccagGTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
EST: gi|86472990|gb|DY239360.1|DY239360
EST:     GTCATATGTTTCAATT                         GT-AAAGTCAAGAAAAGAACATCGCCCATTAGCACCTGCAGTTCCTTCCAG
genomic: GTCATATGCTTCAATTgtaagttttc ... tatgctccagGTAAAAGTCATG-AAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAG
EST: gi|88747131|gb|DY531272.1|DY531272
EST:     CCCCTCCTGTACCATTGAAGGAGGCACCAAAGAAGTCATATGCTTCAATT                         GTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
genomic: CCCCTCCTGTACCATTGAAGGAGGCACCAAAGAAGTCATATGCTTCAATTgtaagttttc ... tatgctccagGTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
EST: gi|89251527|gb|DY623313.1|DY623313
EST:     CCCCTCCTGTACCATTGAAGGAGGCACCAAAGAAGTCATATGCTTCAATT                         GTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
genomic: CCCCTCCTGTACCATTGAAGGAGGCACCAAAGAAGTCATATGCTTCAATTgtaagttttc ... tatgctccagGTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
EST: gi|148977171|gb|EE026014.2|EE026014
EST:     CCCCTCCTGTACCATTGAAGGAGGCACCAAAGAAGTCATATGCTTCAATT                         GTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
genomic: CCCCTCCTGTACCATTGAAGGAGGCACCAAAGAAGTCATATGCTTCAATTgtaagttttc ... tatgctccagGTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
EST: gi|84970145|gb|DW468495.1|DW468495
EST:     CCCCTCCTGTACCATTGAAGGAGGCACCAAAGAAGTCATATGCTTCAATT                         GTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
genomic: CCCCTCCTGTACCATTGAAGGAGGCACCAAAGAAGTCATATGCTTCAATTgtaagttttc ... tatgctccagGTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
EST: gi|91872802|gb|EB402759.1|EB402759
EST:     CCCCTCCTGTACCATTGAAGGAGGCACCAAAGAAGTCATATGCTTCAATT                         GTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
genomic: CCCCTCCTGTACCATTGAAGGAGGCACCAAAGAAGTCATATGCTTCAATTgtaagttttc ... tatgctccagGTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
EST: gi|78089991|gb|DV518365.1|DV518365
EST:     CCCCTCCTGTACCATTGAAGGAGGCACCAAAGAAGTCATATGCTTCAATT                         GTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
genomic: CCCCTCCTGTACCATTGAAGGAGGCACCAAAGAAGTCATATGCTTCAATTgtaagttttc ... tatgctccagGTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
EST: gi|76925262|gb|DV170349.1|DV170349
EST:     CCCCTCCTGTACCATTGAAGGAGGCACCAAAGAAGTCATATGCTTCAATT                         GTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
genomic: CCCCTCCTGTACCATTGAAGGAGGCACCAAAGAAGTCATATGCTTCAATTgtaagttttc ... tatgctccagGTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
EST: gi|78108923|gb|DV527340.1|DV527340
EST:     CCCCTCCTGTACCATTGAAGGAGGCACCAAAGAAGTCATATGCTTCAATT                         GTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
genomic: CCCCTCCTGTACCATTGAAGGAGGCACCAAAGAAGTCATATGCTTCAATTgtaagttttc ... tatgctccagGTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
EST: gi|71762173|gb|DR960110.1|DR960110
EST:     CCCCTCCTGTACCATTGAAGGAGGCACCAAAGAAGTCATATGCTTCAATT                         GTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
genomic: CCCCTCCTGTACCATTGAAGGAGGCACCAAAGAAGTCATATGCTTCAATTgtaagttttc ... tatgctccagGTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
EST: gi|76287741|gb|DV027309.1|DV027309
EST:     CCCCTCCTGTACCATTGAAGGAGGCACCAAAGAAGTCATATGCTTCAATT                         GTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
genomic: CCCCTCCTGTACCATTGAAGGAGGCACCAAAGAAGTCATATGCTTCAATTgtaagttttc ... tatgctccagGTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
EST: gi|78109548|gb|DV527964.1|DV527964
EST:     CCCCTCCTGTACCATTGAAGGAGGCACCAAAGAAGTCATATGCTTCAATT                         GTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
genomic: CCCCTCCTGTACCATTGAAGGAGGCACCAAAGAAGTCATATGCTTCAATTgtaagttttc ... tatgctccagGTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
EST: gi|93282342|gb|EB674606.1|EB674606
EST:     CCCCTCCTGTACCATTGAAGGAGGCACCAAAGAAGTCATATGCTTCAATT                         GTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
genomic: CCCCTCCTGTACCATTGAAGGAGGCACCAAAGAAGTCATATGCTTCAATTgtaagttttc ... tatgctccagGTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
EST: gi|78092220|gb|DV520594.1|DV520594
EST:     CCCTCCTGTACCA-TGNAAGGAGGCACCAAAGAAGTCATATGCTTCAATT                         GTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
genomic: CCCTCCTGTACCATTG-AAGGAGGCACCAAAGAAGTCATATGCTTCAATTgtaagttttc ... tatgctccagGTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
EST: gi|33467080|gb|CF244129.1|CF244129
EST:     TCCTGTACCATTGAAGGAGGCACCAAAGAAGTCATATGCTTCAATT                         GTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
genomic: TCCTGTACCATTGAAGGAGGCACCAAAGAAGTCATATGCTTCAATTgtaagttttc ... tatgctccagGTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
EST: gi|149013312|gb|EE042897.2|EE042897
EST:     CCCTCCTGTACCA-TGNAAGGAGGCACCAAAGAAGTCATATGCTTCAATT                         GTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
genomic: CCCTCCTGTACCATTG-AAGGAGGCACCAAAGAAGTCATATGCTTCAATTgtaagttttc ... tatgctccagGTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
EST: gi|50332319|gb|CO527445.1|CO527445
EST:     CCCCTCCTGTACCATTGAAGGAGGCACCAAAGAAGTCATATGCTTCAATT                         GTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
genomic: CCCCTCCTGTACCATTGAAGGAGGCACCAAAGAAGTCATATGCTTCAATTgtaagttttc ... tatgctccagGTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
EST: gi|71758124|gb|DR956061.1|DR956061
EST:     CCCTCCTGTACCA-TGAAGGGAGGCACCAAAGAAGTCATATGCTTCAATT                         GTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
genomic: CCCTCCTGTACCATTGAA-GGAGGCACCAAAGAAGTCATATGCTTCAATTgtaagttttc ... tatgctccagGTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
EST: gi|71763726|gb|DR961663.1|DR961663
EST:     CCCCTCCTGTACCACTGAAGGAGGCACCAAAGAAGTCATATGCTTCAATT                         GTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
genomic: CCCCTCCTGTACCATTGAAGGAGGCACCAAAGAAGTCATATGCTTCAATTgtaagttttc ... tatgctccagGTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
EST: gi|149089359|gb|EE178597.2|EE178597
EST:     CCCCTCCTGTACCATTGAAGGAGGCACCAAAGAAGTCATATGCTTCAATT                         GTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
genomic: CCCCTCCTGTACCATTGAAGGAGGCACCAAAGAAGTCATATGCTTCAATTgtaagttttc ... tatgctccagGTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
EST: gi|93284250|gb|EB676514.1|EB676514
EST:     CCCCTCCTGTACCATTGAAGGAGGCACCAAAGAAGTCATATGCTTCAATT                         GTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
genomic: CCCCTCCTGTACCATTGAAGGAGGCACCAAAGAAGTCATATGCTTCAATTgtaagttttc ... tatgctccagGTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
EST: gi|149097086|gb|EE182893.2|EE182893
EST:     CCCCTCCTGTACCATTGAAGGAGGCACCAAAGAAGTCATATGCTTCAATT                         GTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
genomic: CCCCTCCTGTACCATTGAAGGAGGCACCAAAGAAGTCATATGCTTCAATTgtaagttttc ... tatgctccagGTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
EST: gi|149090691|gb|EE180018.2|EE180018
EST:     CCCTCCTGTACCA-TGAAGGGAGGCACCAAAGAAGTCATATGCTTCAATT                         GTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
genomic: CCCTCCTGTACCATTGAA-GGAGGCACCAAAGAAGTCATATGCTTCAATTgtaagttttc ... tatgctccagGTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
EST: gi|71299812|gb|DR785918.1|DR785918
EST:     CCCCTCCTGTACCATTGAAGGAGGCACCAAAGAAGTCATATGCTTCAATT                         GTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
genomic: CCCCTCCTGTACCATTGAAGGAGGCACCAAAGAAGTCATATGCTTCAATTgtaagttttc ... tatgctccagGTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
EST: gi|32838206|gb|CD977884.1|CD977884
EST:     ACCATTGAAGGAGGCACCAAAGAAGTCATATGCTTCAATT                         GTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
genomic: ACCATTGAAGGAGGCACCAAAGAAGTCATATGCTTCAATTgtaagttttc ... tatgctccagGTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
EST: gi|149001129|gb|EE038389.2|EE038389
EST:     CCCCTCCTGTACCATTGAAGGAGGCACCAAAGAAGTCATATGCTTCAATT                         GTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
genomic: CCCCTCCTGTACCATTGAAGGAGGCACCAAAGAAGTCATATGCTTCAATTgtaagttttc ... tatgctccagGTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
EST: gi|32839224|gb|CD978905.1|CD978905
EST:     TCATATGCTTCAATT                         GTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
genomic: TCATATGCTTCAATTgtaagttttc ... tatgctccagGTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
EST: gi|50337376|gb|CO532502.1|CO532502
EST:     CCCCTCCTGTACCATTGAAGGAGGCACCAAAGAAGTCATATGCTTCAATT                         GTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
genomic: CCCCTCCTGTACCATTGAAGGAGGCACCAAAGAAGTCATATGCTTCAATTgtaagttttc ... tatgctccagGTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
EST: gi|71308293|gb|DR790381.1|DR790381
EST:     CCCCTCCTGTACCATTGAAGGAGGCACCAAAGAAGTCATATGCTTCAATT                         GTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
genomic: CCCCTCCTGTACCATTGAAGGAGGCACCAAAGAAGTCATATGCTTCAATTgtaagttttc ... tatgctccagGTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
EST: gi|71760109|gb|DR958046.1|DR958046
EST:     CCTCCTGTACCA-TGAAAGGAGGCACCAAAAGAAGTCATATGCTTCAATT                         GTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
genomic: CCTCCTGTACCATTG-AAGGAGGCACC-AAAGAAGTCATATGCTTCAATTgtaagttttc ... tatgctccagGTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
EST: gi|32838606|gb|CD978284.1|CD978284
EST:     ACCATTGAAGGAGGCACCAAAGAAGTCATATGCTTCAATT                         GTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
genomic: ACCATTGAAGGAGGCACCAAAGAAGTCATATGCTTCAATTgtaagttttc ... tatgctccagGTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
EST: gi|71774454|gb|DR972332.1|DR972332
EST:     CCCTCCTGTACCA-TGNAAGGAGGCACCAAAGAAGTCATATGCTTCAATT                         GTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
genomic: CCCTCCTGTACCATTG-AAGGAGGCACCAAAGAAGTCATATGCTTCAATTgtaagttttc ... tatgctccagGTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
EST: gi|148949615|gb|EC895086.2|EC895086
EST:     CCCCTCCTGTACCATTGAAGGAGGCACCAAAGAAGTCATATGCTTCAATT                         GTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
genomic: CCCCTCCTGTACCATTGAAGGAGGCACCAAAGAAGTCATATGCTTCAATTgtaagttttc ... tatgctccagGTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
EST: gi|148949612|gb|EC895083.2|EC895083
EST:     CCCTCCTGTACCA-TGNAAGGAGGCACCAAAGAAGTCATATGCTTCAATT                         GTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
genomic: CCCTCCTGTACCATTG-AAGGAGGCACCAAAGAAGTCATATGCTTCAATTgtaagttttc ... tatgctccagGTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
EST: gi|88757281|gb|DY541422.1|DY541422
EST:     CCCCTCCTGTCCCATTGAAGGAGGCACCAAAGAAGTCATATGCTTCAATT                         GTAAAAGTCATGAAAGAACATGGGCCATTAGCACCTGCAGTTCTTTCCAGA
genomic: CCCCTCCTGTACCATTGAAGGAGGCACCAAAGAAGTCATATGCTTCAATTgtaagttttc ... tatgctccagGTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
EST: gi|91869562|gb|EB400438.1|EB400438
EST:     CCCCTCCTGTACCATTGAAGGAGGCACCAAAGAAGTCATATGCTTCAATT                         GTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
genomic: CCCCTCCTGTACCATTGAAGGAGGCACCAAAGAAGTCATATGCTTCAATTgtaagttttc ... tatgctccagGTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
EST: gi|71310292|gb|DR791438.1|DR791438
EST:     CCCCTCCTGTACCATTGAAGGAGGCACCAAAGAAGTCATATGCTTCAATT                         GTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA
genomic: CCCCTCCTGTACCATTGAAGGAGGCACCAAAGAAGTCATATGCTTCAATTgtaagttttc ... tatgctccagGTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgtgacttgtcacctgtgtagcattaagatgacatttttttgttatgctccagGTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGACCTGCACCCCCAATAACAGAGAAGCAAGCCTCTCCTGCCCCCACTCCAG
                                    tttttttgtt  CT-rich tract
                                 acatttttttgttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ccttctggtgaagaaatttttaggctttcttgttttgtgatgttagttgtgacttgtcacctgtgtagcattaagatgacatttttttgttatgctccagGTAAAAGTCATGAAAGAACATCGGCCATTAGCACCTGCAGTTCCTTCCAGACCTGCACCCCCAATAACAGAGAAGCAAGCCTCTCCTGCCCCCACTCCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCAAG
ccttctg
- - - - -gaagaaa
- - - - - - - - - - - - - - - tgttttg
- - - - - - - - - - - - - - - - - - -tgatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tcacctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtagca