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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcatctaaacccaaaattggagctaaaactttgacttcagttggcatcatctgatgatctgctttacaaccatcttcaaagTTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCACAACAATTAGAGGAAGAGTTCAAGAGATTTGGAACCATTAAACATGAAGG

Basic information

species Zea mays
transcript GRMZM2G069174_T04
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G069174_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os04g30430.1 (Oryza sativa), 3'ss of exon 5
gtatcatctaaacccaaaattggagctaaaactttgacttcagttggcatcatctga-tgatctgctttacaaccatcttcaaagTTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCACAACAATTAGAGGAAGAGTTCAAGAGATTTGGAACCATTAAACATGAAGG
||||  |||| |  |||| | | || |||||  ||   |  |          ||||| |||  || ||||||| ||| |||||||||||||||||||| |||||||| || | |||||| |||| |||||| ||  |||||||||| ||||  ||||||| ||||||  | || || |  || ||
gtattttctagattcaaactcgcagttaaaatcttttttgta-ccattggtgtctgactgaaatgttttacaatcattttcaaagTTGATGCACATGCGATATATGTACGGAATCTGCCTTTAAGTGCCACGCCTGAACAATTAGAAGAAGCATTCAAGAAATTTGGCGCTATCAAGCCGGACGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|93017315|gb|EB642835.1|EB642835
EST:     TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAG                         TTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
genomic: TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAGgtatcatcta ... atcttcaaagTTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
EST: gi|32837285|gb|CD976963.1|CD976963
EST:     TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAG                         TTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
genomic: TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAGgtatcatcta ... atcttcaaagTTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
EST: gi|50329789|gb|CO524915.1|CO524915
EST:     TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAG                         TTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
genomic: TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAGgtatcatcta ... atcttcaaagTTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
EST: gi|71756547|gb|DR954484.1|DR954484
EST:     TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAG                         TTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
genomic: TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAGgtatcatcta ... atcttcaaagTTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
EST: gi|89247221|gb|DY619007.1|DY619007
EST:     TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAG                         TTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
genomic: TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAGgtatcatcta ... atcttcaaagTTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
EST: gi|149015207|gb|EE044991.2|EE044991
EST:     TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAG                         TTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
genomic: TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAGgtatcatcta ... atcttcaaagTTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
EST: gi|76014651|gb|DT941821.1|DT941821
EST:     TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAG                         TTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
genomic: TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAGgtatcatcta ... atcttcaaagTTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
EST: gi|93283657|gb|EB675921.1|EB675921
EST:     TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAG                         TTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
genomic: TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAGgtatcatcta ... atcttcaaagTTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
EST: gi|78080542|gb|DV508954.1|DV508954
EST:     TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAG                         TTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
genomic: TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAGgtatcatcta ... atcttcaaagTTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
EST: gi|71429865|gb|DR810915.1|DR810915
EST:     TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAG                         TTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
genomic: TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAGgtatcatcta ... atcttcaaagTTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
EST: gi|86472990|gb|DY239360.1|DY239360
EST:     TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAG                         TTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
genomic: TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAGgtatcatcta ... atcttcaaagTTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
EST: gi|88747131|gb|DY531272.1|DY531272
EST:     TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAG                         TTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
genomic: TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAGgtatcatcta ... atcttcaaagTTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
EST: gi|89251527|gb|DY623313.1|DY623313
EST:     TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAG                         TTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
genomic: TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAGgtatcatcta ... atcttcaaagTTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
EST: gi|148977171|gb|EE026014.2|EE026014
EST:     TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAG                         TTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
genomic: TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAGgtatcatcta ... atcttcaaagTTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
EST: gi|84970145|gb|DW468495.1|DW468495
EST:     TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAG                         TTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
genomic: TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAGgtatcatcta ... atcttcaaagTTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
EST: gi|91872802|gb|EB402759.1|EB402759
EST:     TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAG                         TTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
genomic: TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAGgtatcatcta ... atcttcaaagTTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
EST: gi|78089991|gb|DV518365.1|DV518365
EST:     TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAG                         TTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
genomic: TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAGgtatcatcta ... atcttcaaagTTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
EST: gi|76925262|gb|DV170349.1|DV170349
EST:     TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAG                         TTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
genomic: TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAGgtatcatcta ... atcttcaaagTTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
EST: gi|71763868|gb|DR961805.1|DR961805
EST:     TTCAAGATCCAGAAG                         TTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
genomic: TTCAAGATCCAGAAGgtatcatcta ... atcttcaaagTTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
EST: gi|78108923|gb|DV527340.1|DV527340
EST:     TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAG                         TTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
genomic: TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAGgtatcatcta ... atcttcaaagTTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
EST: gi|71762173|gb|DR960110.1|DR960110
EST:     TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAG                         TTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
genomic: TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAGgtatcatcta ... atcttcaaagTTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
EST: gi|76287741|gb|DV027309.1|DV027309
EST:     TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAG                         TTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
genomic: TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAGgtatcatcta ... atcttcaaagTTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
EST: gi|50324319|gb|CO519445.1|CO519445
EST:     TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAG                         TTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
genomic: TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAGgtatcatcta ... atcttcaaagTTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
EST: gi|78109548|gb|DV527964.1|DV527964
EST:     TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAG                         TTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
genomic: TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAGgtatcatcta ... atcttcaaagTTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
EST: gi|33092963|gb|CF052957.1|CF052957
EST:     TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAG                         TTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
genomic: TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAGgtatcatcta ... atcttcaaagTTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
EST: gi|93282342|gb|EB674606.1|EB674606
EST:     TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAG                         TTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
genomic: TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAGgtatcatcta ... atcttcaaagTTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
EST: gi|78092220|gb|DV520594.1|DV520594
EST:     TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAG                         TTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
genomic: TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAGgtatcatcta ... atcttcaaagTTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
EST: gi|33467080|gb|CF244129.1|CF244129
EST:     TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAG                         TTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
genomic: TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAGgtatcatcta ... atcttcaaagTTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
EST: gi|94479305|gb|EB708263.1|EB708263
EST:     CAAGATCCAGAAG                         TTGATGCACATGCCATATATGTG-GAAAGTCTGCCATTAAAAGCCACACCA
genomic: CAAGATCCAGAAGgtatcatcta ... atcttcaaagTTGATGCACATGCCATATATGTGCG-AAGTCTGCCATTAAATGCCACACCA
EST: gi|149013312|gb|EE042897.2|EE042897
EST:     TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAG                         TTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
genomic: TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAGgtatcatcta ... atcttcaaagTTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
EST: gi|50332319|gb|CO527445.1|CO527445
EST:     TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAG                         TTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
genomic: TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAGgtatcatcta ... atcttcaaagTTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
EST: gi|71758124|gb|DR956061.1|DR956061
EST:     TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAG                         TTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
genomic: TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAGgtatcatcta ... atcttcaaagTTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
EST: gi|38687433|gb|CK144464.1|CK144464
EST:     TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAG                         TTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
genomic: TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAGgtatcatcta ... atcttcaaagTTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
EST: gi|71763726|gb|DR961663.1|DR961663
EST:     TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAG                         TTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
genomic: TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAGgtatcatcta ... atcttcaaagTTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
EST: gi|149089359|gb|EE178597.2|EE178597
EST:     TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAG                         TTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
genomic: TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAGgtatcatcta ... atcttcaaagTTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
EST: gi|93284250|gb|EB676514.1|EB676514
EST:     TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAG                         TTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
genomic: TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAGgtatcatcta ... atcttcaaagTTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
EST: gi|149097086|gb|EE182893.2|EE182893
EST:     TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAG                         TTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
genomic: TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAGgtatcatcta ... atcttcaaagTTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
EST: gi|149090691|gb|EE180018.2|EE180018
EST:     TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAG                         TTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
genomic: TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAGgtatcatcta ... atcttcaaagTTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
EST: gi|71299812|gb|DR785918.1|DR785918
EST:     TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAG                         TTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
genomic: TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAGgtatcatcta ... atcttcaaagTTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
EST: gi|101386772|gb|EB815403.1|EB815403
EST:     TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAG                         TTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
genomic: TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAGgtatcatcta ... atcttcaaagTTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
EST: gi|32838206|gb|CD977884.1|CD977884
EST:     TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAG                         TTGATGGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCA
genomic: TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAGgtatcatcta ... atcttcaaagTTGAT-GCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCA
EST: gi|89249460|gb|DY621246.1|DY621246
EST:     TCCAGCTTTCTCCCTTAATCCTCAGAGGGGCGGCTTTCAAGATCCAGAAG                         TTGATGCACATCCCATATATGTGGGAAGTCTGCCATTAAATGCCACACCAC
genomic: TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAGgtatcatcta ... atcttcaaagTTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
EST: gi|149001129|gb|EE038389.2|EE038389
EST:     TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAG                         TTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
genomic: TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAGgtatcatcta ... atcttcaaagTTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
EST: gi|32839224|gb|CD978905.1|CD978905
EST:     TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAG                         TTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
genomic: TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAGgtatcatcta ... atcttcaaagTTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
EST: gi|50337376|gb|CO532502.1|CO532502
EST:     TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAG                         TTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
genomic: TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAGgtatcatcta ... atcttcaaagTTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
EST: gi|71308293|gb|DR790381.1|DR790381
EST:     TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAG                         TTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
genomic: TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAGgtatcatcta ... atcttcaaagTTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
EST: gi|71760109|gb|DR958046.1|DR958046
EST:     TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAG                         TTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
genomic: TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAGgtatcatcta ... atcttcaaagTTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
EST: gi|32838606|gb|CD978284.1|CD978284
EST:     TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAG                         TTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
genomic: TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAGgtatcatcta ... atcttcaaagTTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
EST: gi|32838442|gb|CD978120.1|CD978120
EST:     AATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAG                         TTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCGC
genomic: AATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAGgtatcatcta ... atcttcaaagTTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
EST: gi|71774454|gb|DR972332.1|DR972332
EST:     TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAG                         TTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
genomic: TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAGgtatcatcta ... atcttcaaagTTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
EST: gi|74246261|gb|DT654175.1|DT654175
EST:     AGCGGCGGCTTTCAAGATCCAGAAG                         TTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
genomic: AGCGGCGGCTTTCAAGATCCAGAAGgtatcatcta ... atcttcaaagTTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
EST: gi|148949615|gb|EC895086.2|EC895086
EST:     TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAG                         TTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
genomic: TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAGgtatcatcta ... atcttcaaagTTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
EST: gi|148949612|gb|EC895083.2|EC895083
EST:     TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAG                         TTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
genomic: TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAGgtatcatcta ... atcttcaaagTTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
EST: gi|93282822|gb|EB675086.1|EB675086
EST:     TCAAGATCCAGAAG                         TTGATGCACATCCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
genomic: TCAAGATCCAGAAGgtatcatcta ... atcttcaaagTTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
EST: gi|88757281|gb|DY541422.1|DY541422
EST:     TCCAGCTTTCTCCCTTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAG                         TTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
genomic: TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAGgtatcatcta ... atcttcaaagTTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
EST: gi|91869562|gb|EB400438.1|EB400438
EST:     TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAG                         TTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
genomic: TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAGgtatcatcta ... atcttcaaagTTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
EST: gi|71310292|gb|DR791438.1|DR791438
EST:     TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAG                         TTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC
genomic: TCCAGCTTTCTCCCCTAATCCTCAGAGCGGCGGCTTTCAAGATCCAGAAGgtatcatcta ... atcttcaaagTTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aactttgacttcagttggcatcatctgatgatctgctttacaaccatcttcaaagTTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCACAACAATTAGAGGAAGAGTTCAAGAGATTTGGAACCATTAAACATGAAGG
                      atctgat  putative branch site (score: 4)
                                           ccatcttc  putative PPT
                                    tttacaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatcatctaaacccaaaattggagctaaaactttgacttcagttggcatcatctgatgatctgctttacaaccatcttcaaagTTGATGCACATGCCATATATGTGCGAAGTCTGCCATTAAATGCCACACCACAACAATTAGAGGAAGAGTTCAAGAGATTTGGAACCATTAAACATGAAGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA