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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTACAAGGCCGTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTATTGCCTCACAGgtattgttgcatgctattgtatgttgtaactccaaagcaaagtgattaaggtggctgcttttcataactaatgattatgtttcctcag

Basic information

species Zea mays
transcript GRMZM2G067067_T05
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211009144|gb|FL186797.1|FL186797
EST:     GTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTATTGCCTCACAG                         AGGATAAGAAGAAGTGTATAGAAATACCAGTTGCTTGTGAGTTGCTGAATC
genomic: GTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTATTGCCTCACAGgtattgttgc ... gtttcctcagAGGATAAGAAGAAGTGTATAGAAATACCAGTTGCTTGTGAGTTGCTGAATC
EST: gi|211115155|gb|FL480213.1|FL480213
EST:     GTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTATTGCCTCMCAG                         AGGATAAGAAGAAGTGTATAGAAATACCAGTTGCTTGTGAGTTGCTGAATC
genomic: GTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTATTGCCTCACAGgtattgttgc ... gtttcctcagAGGATAAGAAGAAGTGTATAGAAATACCAGTTGCTTGTGAGTTGCTGAATC
EST: gi|60340050|gb|DN207023.1|DN207023
EST:     GTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTATTGCCTCACAG                         AGGATAAGAAGAAGTGTATAGAAATACCAGTTGCTTGTGAGTTGCTGAATC
genomic: GTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTATTGCCTCACAGgtattgttgc ... gtttcctcagAGGATAAGAAGAAGTGTATAGAAATACCAGTTGCTTGTGAGTTGCTGAATC
EST: gi|83278971|gb|DV942979.1|DV942979
EST:     GTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTATTGCCTCACAG                         AGGATAAGAAGAAGTGTATAGAAATACCAGTTGCTTGTGAGTTGCTGAATC
genomic: GTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTATTGCCTCACAGgtattgttgc ... gtttcctcagAGGATAAGAAGAAGTGTATAGAAATACCAGTTGCTTGTGAGTTGCTGAATC
EST: gi|211184107|gb|FL465368.1|FL465368
EST:     GTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTATTGCCTCACAG                         AGGATAAGAAGAAGTGTATAGAAATACCAGTTGCTTGTGAGTTGCTGAATC
genomic: GTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTATTGCCTCACAGgtattgttgc ... gtttcctcagAGGATAAGAAGAAGTGTATAGAAATACCAGTTGCTTGTGAGTTGCTGAATC
EST: gi|13126278|gb|BG316848.1|BG316848
EST:     GTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTATTGCCTCACAG                         AGGATAAGAAGAAGTGTATAGAAATACCAGTTGCTTGTGAGTTGCTGAATC
genomic: GTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTATTGCCTCACAGgtattgttgc ... gtttcctcagAGGATAAGAAGAAGTGTATAGAAATACCAGTTGCTTGTGAGTTGCTGAATC
EST: gi|6827963|gb|AW331606.1|AW331606
EST:     GTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTATTGCCTCACAG                         AGGATAAGAAGAAGTGTATAGAAATACCAGTTGCTTGTGAGTTGCTGAATC
genomic: GTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTATTGCCTCACAGgtattgttgc ... gtttcctcagAGGATAAGAAGAAGTGTATAGAAATACCAGTTGCTTGTGAGTTGCTGAATC
EST: gi|6342613|gb|AW165437.1|AW165437
EST:     GTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTATTGCCTCACAG                         AGGATAAGAAGAAGTGTATAGAAATACCAGTTGCTTGTGAGTTGCTGAATC
genomic: GTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTATTGCCTCACAGgtattgttgc ... gtttcctcagAGGATAAGAAGAAGTGTATAGAAATACCAGTTGCTTGTGAGTTGCTGAATC
EST: gi|12973745|gb|BG268634.1|BG268634
EST:     GTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTATTGCCTCACAG                         AGGATAAGAAGAAGTGTATAGAAATACCAGTTGCTTGTGAGTTGCTGAATC
genomic: GTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTATTGCCTCACAGgtattgttgc ... gtttcctcagAGGATAAGAAGAAGTGTATAGAAATACCAGTTGCTTGTGAGTTGCTGAATC
EST: gi|13126322|gb|BG316892.1|BG316892
EST:     GTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTATTGCCTCACAG                         AGGATAAGAAGAAGTGTATAGAAATACCAGTTGCTTGTGAGTTGCTGAATC
genomic: GTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTATTGCCTCACAGgtattgttgc ... gtttcctcagAGGATAAGAAGAAGTGTATAGAAATACCAGTTGCTTGTGAGTTGCTGAATC
EST: gi|32864042|gb|CF003724.1|CF003724
EST:     GTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTATTGCCTCACAG                         AGGATAAGAAGAAGTGTATAGAAATACCAGTTGCTTGTGAGTTGCTGAATC
genomic: GTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTATTGCCTCACAGgtattgttgc ... gtttcctcagAGGATAAGAAGAAGTGTATAGAAATACCAGTTGCTTGTGAGTTGCTGAATC