1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtattgttgcatgctattgtatgttgtaactccaaagcaaagtgattaaggtggctgcttttcataactaatgattatgtttcctcagAGGATAAGAAGAAGTGTATAGAAATACCAGTTGCTTGTGAGTTGCTGAATCTAGTATTAGGCTTGCAGTTCCGCCCTCAGGTTGACAAGCTTAGTAATTA
species | Zea mays |
transcript | GRMZM2G067067_T05 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTATTGCCTCACAG AGGATAAGAAGAAGTGTATAGAAATACCAGTTGCTTGTGAGTTGCTGAATCEST: gi|211115155|gb|FL480213.1|FL480213
genomic: GTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTATTGCCTCACAGgtattgttgc ... gtttcctcagAGGATAAGAAGAAGTGTATAGAAATACCAGTTGCTTGTGAGTTGCTGAATC
EST: GTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTATTGCCTCMCAG AGGATAAGAAGAAGTGTATAGAAATACCAGTTGCTTGTGAGTTGCTGAATCEST: gi|60340050|gb|DN207023.1|DN207023
genomic: GTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTATTGCCTCACAGgtattgttgc ... gtttcctcagAGGATAAGAAGAAGTGTATAGAAATACCAGTTGCTTGTGAGTTGCTGAATC
EST: GTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTATTGCCTCACAG AGGATAAGAAGAAGTGTATAGAAATACCAGTTGCTTGTGAGTTGCTGAATCEST: gi|83278971|gb|DV942979.1|DV942979
genomic: GTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTATTGCCTCACAGgtattgttgc ... gtttcctcagAGGATAAGAAGAAGTGTATAGAAATACCAGTTGCTTGTGAGTTGCTGAATC
EST: GTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTATTGCCTCACAG AGGATAAGAAGAAGTGTATAGAAATACCAGTTGCTTGTGAGTTGCTGAATCEST: gi|211184107|gb|FL465368.1|FL465368
genomic: GTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTATTGCCTCACAGgtattgttgc ... gtttcctcagAGGATAAGAAGAAGTGTATAGAAATACCAGTTGCTTGTGAGTTGCTGAATC
EST: GTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTATTGCCTCACAG AGGATAAGAAGAAGTGTATAGAAATACCAGTTGCTTGTGAGTTGCTGAATCEST: gi|13126278|gb|BG316848.1|BG316848
genomic: GTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTATTGCCTCACAGgtattgttgc ... gtttcctcagAGGATAAGAAGAAGTGTATAGAAATACCAGTTGCTTGTGAGTTGCTGAATC
EST: GTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTATTGCCTCACAG AGGATAAGAAGAAGTGTATAGAAATACCAGTTGCTTGTGAGTTGCTGAATCEST: gi|6827963|gb|AW331606.1|AW331606
genomic: GTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTATTGCCTCACAGgtattgttgc ... gtttcctcagAGGATAAGAAGAAGTGTATAGAAATACCAGTTGCTTGTGAGTTGCTGAATC
EST: GTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTATTGCCTCACAG AGGATAAGAAGAAGTGTATAGAAATACCAGTTGCTTGTGAGTTGCTGAATCEST: gi|6342613|gb|AW165437.1|AW165437
genomic: GTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTATTGCCTCACAGgtattgttgc ... gtttcctcagAGGATAAGAAGAAGTGTATAGAAATACCAGTTGCTTGTGAGTTGCTGAATC
EST: GTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTATTGCCTCACAG AGGATAAGAAGAAGTGTATAGAAATACCAGTTGCTTGTGAGTTGCTGAATCEST: gi|12973745|gb|BG268634.1|BG268634
genomic: GTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTATTGCCTCACAGgtattgttgc ... gtttcctcagAGGATAAGAAGAAGTGTATAGAAATACCAGTTGCTTGTGAGTTGCTGAATC
EST: GTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTATTGCCTCACAG AGGATAAGAAGAAGTGTATAGAAATACCAGTTGCTTGTGAGTTGCTGAATCEST: gi|13126322|gb|BG316892.1|BG316892
genomic: GTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTATTGCCTCACAGgtattgttgc ... gtttcctcagAGGATAAGAAGAAGTGTATAGAAATACCAGTTGCTTGTGAGTTGCTGAATC
EST: GTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTATTGCCTCACAG AGGATAAGAAGAAGTGTATAGAAATACCAGTTGCTTGTGAGTTGCTGAATCEST: gi|32864042|gb|CF003724.1|CF003724
genomic: GTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTATTGCCTCACAGgtattgttgc ... gtttcctcagAGGATAAGAAGAAGTGTATAGAAATACCAGTTGCTTGTGAGTTGCTGAATC
EST: GTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTATTGCCTCACAG AGGATAAGAAGAAGTGTATAGAAATACCAGTTGCTTGTGAGTTGCTGAATC
genomic: GTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTATTGCCTCACAGgtattgttgc ... gtttcctcagAGGATAAGAAGAAGTGTATAGAAATACCAGTTGCTTGTGAGTTGCTGAATC
aaagcaaagtgattaaggtggctgcttttcataactaatgattatgtttcctcagAGGATAAGAAGAAGTGTATAGAAATACCAGTTGCTTGTGAGTTGCTGAATCTAGTATTAGGCTTGCAGTTCCGCCCTCAGGTTGACAAGCTTAGTAATTA
aactaat putative branch site (score: 2)
tgtttcctc putative PPT
ataactaatgattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattgttgcatgctattgtatgttgtaactccaaagcaaagtgattaaggtggctgcttttcataactaatgattatgtttcctcagAGGATAAGAAGAAGTGTATAGAAATACCAGTTGCTTGTGAGTTGCTGAATCTAGTATTAGGCTTGCAGTTCCGCCCTCAGGTTGACAAGCTTAGTAATTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT