1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gttgcatgcagccatgcgctacagagtttggagaggcatgtctattatactaaattactaatgcaaccttactggtcgtatttttctcctgctgggacagCCCAGAAGGCATTGAAACACTCTGTTCTCACCTTGAAGTTCCCCACACCGACGTTAGGATTCTAATGTTAGCATG
species | Zea mays |
transcript | GRMZM2G067067_T05 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATTGATCAATTTTTCTATACTTATGCCGATAACTCATCTGTCATGATTGA CCCAGAAGGCATTGAAACACTCTGTTCTCACCTTGAAGTTCCCCACACCGAEST: gi|32864042|gb|CF003724.1|CF003724
genomic: ATTGATCAATTTTTCTATACTTATGCCGATAACTCATCTGTCATGATTGAgtaagttttt ... gctgggacagCCCAGAAGGCATTGAAACACTCTGTTCTCACCTTGAAGTTCCCCACACCGA
EST: ATTGATCAATTTTTCTATACTTATGCCGATAACTCATCTGTCATGATTGA CCCAGAAGGCATTGAAACACTCTGTTCTCACCTTGAAGTTCCCCACACCGA
genomic: ATTGATCAATTTTTCTATACTTATGCCGATAACTCATCTGTCATGATTGAgtaagttttt ... gctgggacagCCCAGAAGGCATTGAAACACTCTGTTCTCACCTTGAAGTTCCCCACACCGA
tatactaaattactaatgcaaccttactggtcgtatttttctcctgctgggacagCCCAGAAGGCATTGAAACACTCTGTTCTCACCTTGAAGTTCCCCACACCGACGTTAGGATTCTAATGTTAGCATG
tatttttctcctgct CT-rich tract
taaattactaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgcatgcagccatgcgctacagagtttggagaggcatgtctattatactaaattactaatgcaaccttactggtcgtatttttctcctgctgggacagCCCAGAAGGCATTGAAACACTCTGTTCTCACCTTGAAGTTCCCCACACCGACGTTAGGATTCTAATGTTAGCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- tgcatgc
- - - - - gccatgc
- - - - - - - - -gctacag
- - - - - - - - - - - - - - - - -aggcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttactg