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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgattctgtctccccaaataatatcttatgttcaagtgagctatgcatgtcagatttaatttatggagtgaagaatttactttgtaatcaagaacttccatctaacattaactgttgatatttttttatgttcaagtgtaaccttgcttaccactttcatgtgttctataaatccagGTTACAAGGCCGTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTATTGCCTCACAG

Basic information

species Zea mays
transcript GRMZM2G067067_T05
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211009144|gb|FL186797.1|FL186797
EST:     TAAACTGAAGAAAGCATTTCCTGAACTGGTTCAAGAG                         GTTACAAGGCCGTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTAT
genomic: TAAACTGAAGAAAGCATTTCCTGAACTGGTTCAAGAGgtgattctgt ... ataaatccagGTTACAAGGCCGTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTAT
EST: gi|211115155|gb|FL480213.1|FL480213
EST:     CAGACAGCATCAGTAAACTGAAGAAAGCATTTCCTGAACTGGTTCAAGAG                         GTTACAAGGCCGTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTAT
genomic: CAGACAGCATCAGTAAACTGAAGAAAGCATTTCCTGAACTGGTTCAAGAGgtgattctgt ... ataaatccagGTTACAAGGCCGTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTAT
EST: gi|60340050|gb|DN207023.1|DN207023
EST:     CAGACAGCATCAGTAAACTGAAGAAAGCATTTCCTGAACTGGTTCAAGAG                         GTTACAAGGCCGTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTAT
genomic: CAGACAGCATCAGTAAACTGAAGAAAGCATTTCCTGAACTGGTTCAAGAGgtgattctgt ... ataaatccagGTTACAAGGCCGTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTAT
EST: gi|83278971|gb|DV942979.1|DV942979
EST:     CAGACAGCATCAGTAAACTGAAGAAAGCATTTCCTGAACTGGTTCAAGAG                         GTTACAAGGCCGTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTAT
genomic: CAGACAGCATCAGTAAACTGAAGAAAGCATTTCCTGAACTGGTTCAAGAGgtgattctgt ... ataaatccagGTTACAAGGCCGTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTAT
EST: gi|211184107|gb|FL465368.1|FL465368
EST:     CAGACAGCATCAGTAAACTGAAGAAAGCATTTCCTGAACTGGTTCAAGAG                         GTTACAAGGCCGTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTAT
genomic: CAGACAGCATCAGTAAACTGAAGAAAGCATTTCCTGAACTGGTTCAAGAGgtgattctgt ... ataaatccagGTTACAAGGCCGTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTAT
EST: gi|13126278|gb|BG316848.1|BG316848
EST:     AGCATCAGTAAACTGAAGAAAGCATTTCCTGAGCTGGTTCAAGAG                         GTTACAAGGCCGTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTAT
genomic: AGCATCAGTAAACTGAAGAAAGCATTTCCTGAACTGGTTCAAGAGgtgattctgt ... ataaatccagGTTACAAGGCCGTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTAT
EST: gi|6827963|gb|AW331606.1|AW331606
EST:     AGAAAGCATTTCCTGAACTGGTTCAAGAG                         GTTCCAAGGCCGTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTAT
genomic: AGAAAGCATTTCCTGAACTGGTTCAAGAGgtgattctgt ... ataaatccagGTTACAAGGCCGTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTAT
EST: gi|6342613|gb|AW165437.1|AW165437
EST:     ACTGAAGAAAGCATTTCCTGAACTGGTTCAAGAG                         GTTACAAGGCCGTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTAT
genomic: ACTGAAGAAAGCATTTCCTGAACTGGTTCAAGAGgtgattctgt ... ataaatccagGTTACAAGGCCGTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTAT
EST: gi|12973745|gb|BG268634.1|BG268634
EST:     CAGACAGCATCAGTAAACTGAAGAAAGCATTTCCTGAACTGGTTCAAGAG                         GTTACAAGGCCGTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTAT
genomic: CAGACAGCATCAGTAAACTGAAGAAAGCATTTCCTGAACTGGTTCAAGAGgtgattctgt ... ataaatccagGTTACAAGGCCGTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTAT
EST: gi|32864042|gb|CF003724.1|CF003724
EST:     CAGACAGCATCAGTAAACTGAAGAAAGCATTTCCTGAACTGGTTCAAGAG                         GTTACAAGGCCGTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTAT
genomic: CAGACAGCATCAGTAAACTGAAGAAAGCATTTCCTGAACTGGTTCAAGAGgtgattctgt ... ataaatccagGTTACAAGGCCGTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttatgttcaagtgtaaccttgcttaccactttcatgtgttctataaatccagGTTACAAGGCCGTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTATTGCCTCACAG
                      tgcttac  putative branch site (score: 2)
                                         ttctataaat  TA-rich tract