1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatgtcatctgttttctgaaatttccaattttgtttatttctttcacaaatatctaacaaatcctatttacagGAAAATGGGCTGTGAGAAGCAAGGTTATTTTACCTTG
species | Zea mays |
transcript | GRMZM2G067067_T05 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCTCACCTTGAAGTTCCCCACACCGACGTTAGGATTCTAATGTTAGCATG GAAAATGGGCTGTGAGAAGCAAGGTTATTTTACCTTGEST: gi|83278971|gb|DV942979.1|DV942979
genomic: TCTCACCTTGAAGTTCCCCACACCGACGTTAGGATTCTAATGTTAGCATGgtatgtcatc ... ctatttacagGAAAATGGGCTGTGAGAAGCAAGGTTATTTTACCTTG
EST: TCTCACCTTGAAGTTCCCCACACCGACGTTAGGATTCTAATGTTAGCATG GAAAATGGGCTGTGAGAAGCAAGGTTATTTTACCTTGEST: gi|211184107|gb|FL465368.1|FL465368
genomic: TCTCACCTTGAAGTTCCCCACACCGACGTTAGGATTCTAATGTTAGCATGgtatgtcatc ... ctatttacagGAAAATGGGCTGTGAGAAGCAAGGTTATTTTACCTTG
EST: GACGTTAGGATTCTAATGTTAGCATG GAAAATGGGCTGTGAGAAGCAAGGTTATTTTACCTTGEST: gi|12973745|gb|BG268634.1|BG268634
genomic: GACGTTAGGATTCTAATGTTAGCATGgtatgtcatc ... ctatttacagGAAAATGGGCTGTGAGAAGCAAGGTTATTTTACCTTG
EST: GTTCCCCACACCGACGTTAGGATTCTAATGTTAGCATG GAAAATGGGCTGTGAGAAGCAAGGTTATTTTACCTTGEST: gi|32864042|gb|CF003724.1|CF003724
genomic: GTTCCCCACACCGACGTTAGGATTCTAATGTTAGCATGgtatgtcatc ... ctatttacagGAAAATGGGCTGTGAGAAGCAAGGTTATTTTACCTTG
EST: TCTCACCTTGAAGTTCCCCACACCGACGTTAGGATTCTAATGTTAGCATG GAAAATGGGCTGTGAGAAGCAAGGTTATTTTACCTTG
genomic: TCTCACCTTGAAGTTCCCCACACCGACGTTAGGATTCTAATGTTAGCATGgtatgtcatc ... ctatttacagGAAAATGGGCTGTGAGAAGCAAGGTTATTTTACCTTG
aaatttccaattttgtttatttctttcacaaatatctaacaaatcctatttacagGAAAATGGGCTGTGAGAAGCAAGGTTATTTTACCTTG
atctaac putative branch site (score: 2)
tcctattt putative PPT
aattttgtttatttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtcatctgttttctgaaatttccaattttgtttatttctttcacaaatatctaacaaatcctatttacagGAAAATGGGCTGTGAGAAGCAAGGTTATTTTACCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG