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TGCACCAATGGCTTTTGTACGAAAGGGTCATTCTGGGTCACAATCTTCTGATGGCCCTGGAGATTTGGACTGTGACAGCAATGACCTCGAAGGAGAACTGgtaaagttctattctatctagactgccttttgtccctttcacattttttttcaaaagtttttcagaaaaaatattatgtagacccactcttaaacgtgtgtattctatcag
species | Zea mays |
transcript | GRMZM2G052688_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ATGGCCCTGGAGATTTGGACTGTGACAGCAATGACCTCGAAGGAGAACTG ATGACAAGCCTATCACCTCTTCAAACTGCATTGAAACGAGAGGCAAATGGCEST: gi|91872021|gb|EB401978.1|EB401978
genomic: ATGGCCCTGGAGATTTGGACTGTGACAGCAATGACCTCGAAGGAGAACTGgtaaagttct ... attctatcagATGACAAGCCTATCACCTCTTCAAACTGCATTGAAACGAGAGGCAAATG-C
EST: ATGGCCCTGGAGATTTGGACTGTGACAGCAATGACCTCGAAGGAGAACTG ATGACAAGCCTATCACCTCTTCAAACTGCATTGAAACGAGAGGCAAATGCAEST: gi|60396041|gb|DN228911.1|DN228911
genomic: ATGGCCCTGGAGATTTGGACTGTGACAGCAATGACCTCGAAGGAGAACTGgtaaagttct ... attctatcagATGACAAGCCTATCACCTCTTCAAACTGCATTGAAACGAGAGGCAAATGCA
EST: ATGGCCCTGGAGATTTGGACTGTGACAGCAATGACCTCGAAGGAGAACTG ATGACAAGCCTATCACCTCTTCAAACTGCATTGAAACGAGAGGCAAATGCAEST: gi|78088729|gb|DV517122.1|DV517122
genomic: ATGGCCCTGGAGATTTGGACTGTGACAGCAATGACCTCGAAGGAGAACTGgtaaagttct ... attctatcagATGACAAGCCTATCACCTCTTCAAACTGCATTGAAACGAGAGGCAAATGCA
EST: ATGGCCCTGGAGATTTGGACTGTGACAGCAATGACCTCGAAGGAGAACTG ATGACAAGCCTATCACCTCTTCAAACTGCATTGAAACGAGAGGCAAATGCAEST: gi|22935404|gb|BU571679.1|BU571679
genomic: ATGGCCCTGGAGATTTGGACTGTGACAGCAATGACCTCGAAGGAGAACTGgtaaagttct ... attctatcagATGACAAGCCTATCACCTCTTCAAACTGCATTGAAACGAGAGGCAAATGCA
EST: TGGCCCTGGAGATTTGGCACTGTGACAGCAATGACCTCGAAGGAGAACTG ATGACAAGCCTATCACCTCTTCAAACTGCATTGAAACGAGAGGCAAATGCAEST: gi|74233407|gb|DT641321.1|DT641321
genomic: TGGCCCTGGAGATTTGG-ACTGTGACAGCAATGACCTCGAAGGAGAACTGgtaaagttct ... attctatcagATGACAAGCCTATCACCTCTTCAAACTGCATTGAAACGAGAGGCAAATGCA
EST: ATGGCCCTGGAGATTTGGACTGTGACAGCAATGACCTCGAAGGAGAACTG ATGACAAGCCTATCACCTCTTCAAACTGCATTGAAACGAGAGGCAAATGCAEST: gi|78073936|gb|DV502370.1|DV502370
genomic: ATGGCCCTGGAGATTTGGACTGTGACAGCAATGACCTCGAAGGAGAACTGgtaaagttct ... attctatcagATGACAAGCCTATCACCTCTTCAAACTGCATTGAAACGAGAGGCAAATGCA
EST: ATGGCCCTGGAGATTTGGACTGTGACAGCAATGACCTCGAAGGAGAACTG ATGACCAGCCTATCACCTCTTCCAACTGCATTGAAACGAGAGGCAAATGCAEST: gi|87156124|gb|DY400913.1|DY400913
genomic: ATGGCCCTGGAGATTTGGACTGTGACAGCAATGACCTCGAAGGAGAACTGgtaaagttct ... attctatcagATGACAAGCCTATCACCTCTTCAAACTGCATTGAAACGAGAGGCAAATGCA
EST: ATGGCCCTGGAGATTTGGACTGTGACAGCAATGACCTCGAAGGAGAACTG ATGACAAGCCTATCACCTCTTCAAACTGCATTGAAACGAGAGGCAAATGCA
genomic: ATGGCCCTGGAGATTTGGACTGTGACAGCAATGACCTCGAAGGAGAACTGgtaaagttct ... attctatcagATGACAAGCCTATCACCTCTTCAAACTGCATTGAAACGAGAGGCAAATGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCACCAATGGCTTTTGTACGAAAGGGTCATTCTGGGTCACAATCTTCTGATGGCCCTGGAGATTTGGACTGTGACAGCAATGACCTCGAAGGAGAACTGgtaaagttctattctatctagactgccttttgtccctttcacattttttttcaaaagtttttcagaaaaaatattatgtagacccactcttaaacgtgtgtattctatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA