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gtaattgctattttgatatgatcttcataaaaaaggtactttagtgcttattcaaatatgtaatgtgccctgaaatatccataaactacgcagGAAATCTTGGATCAGTTTGAGTGTCACACTGGCATCACAGTAACCAACACCTGGAGTTCAGATGTGACTCATGTGATTGCTAATACGGATGAACGTGGGG
species | Zea mays |
transcript | GRMZM2G052688_T01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TGACTAGTGAATGGGTGATATGTGGATCTGCGCTCGTTGGCCATGAGAAG GAAATCTTGGATCAGTTTGAGTGTCACACTGGCATCACAGTAACCAACACCEST: gi|211129938|gb|FL016638.1|FL016638
genomic: TGACTAGTGAATGGGTGATATGTGGATCTGCGCTCGTTGGCCATGAGAAGgtaattgcta ... aactacgcagGAAATCTTGGATCAGTTTGAGTGTCACACTGGCATCACAGTAACCAACACC
EST: TGACTAGTGAATGGGTGATATGTGGATNTGCGCTCGTTGGCCATGAGAAA GAAATCTTGGATCAGTTTGAGTGTCACACTGGCATCACAGTAACCAACACCEST: gi|91051894|gb|EB162312.1|EB162312
genomic: TGACTAGTGAATGGGTGATATGTGGATCTGCGCTCGTTGGCCATGAGAAGgtaattgcta ... aactacgcagGAAATCTTGGATCAGTTTGAGTGTCACACTGGCATCACAGTAACCAACACC
EST: TGACTAGTGAATGGGTGATATGTGGATCTGCGCTCGTTGGCCATGAGAAG GAAATCTTGGATCAGTTTGAGTGTCACACTGGCATCACAGTAACCAACACCEST: gi|88755916|gb|DY540057.1|DY540057
genomic: TGACTAGTGAATGGGTGATATGTGGATCTGCGCTCGTTGGCCATGAGAAGgtaattgcta ... aactacgcagGAAATCTTGGATCAGTTTGAGTGTCACACTGGCATCACAGTAACCAACACC
EST: TGACTAGTGAATGGGTGATATGTGGATCTGCGCTCGTTGGCCATGAGAAG GAAATCTTGGATCAGTTTGAGTGTCACACTGGCATCACAGTAACCAACACC
genomic: TGACTAGTGAATGGGTGATATGTGGATCTGCGCTCGTTGGCCATGAGAAGgtaattgcta ... aactacgcagGAAATCTTGGATCAGTTTGAGTGTCACACTGGCATCACAGTAACCAACACC
ctttagtgcttattcaaatatgtaatgtgccctgaaatatccataaactacgcagGAAATCTTGGATCAGTTTGAGTGTCACACTGGCATCACAGTAACCAACACCTGGAGTTCAGATGTGACTCATGTGATTGCTAATACGGATGAACGTGGGG
ttattcaaatatgtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattgctattttgatatgatcttcataaaaaaggtactttagtgcttattcaaatatgtaatgtgccctgaaatatccataaactacgcagGAAATCTTGGATCAGTTTGAGTGTCACACTGGCATCACAGTAACCAACACCTGGAGTTCAGATGTGACTCATGTGATTGCTAATACGGATGAACGTGGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG