1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...aaatggcgaccttcgatccatttagagtaaaatgaggggataattgcattcgtatactgaacttcttggtcgtctgacggtgaaattttttgtttgtcagCCTGAAGTTGCTCACCTCGCCCACAACGCTGCCGTGTTACCACACATCCTGCAG
species | Zea mays |
transcript | GRMZM2G052688_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGCAGAAGATGGAGCTGGAGCTCACCTGCCCCGTCTG CCTGAAGTTGCTCACCTCGCCCACAACGCTGCCGTGTTACCACACATCCTGEST: gi|149027659|gb|EE286042.2|EE286042
genomic: TGCAGAAGATGGAGCTGGAGCTCACCTGCCCCGTCTGgtgggtcaag ... tgtttgtcagCCTGAAGTTGCTCACCTCGCCCACAACGCTGCCGTGTTACCACACATCCTG
EST: CTGGTGCTCAACCTGCAGAAGATGGAGCTGGAGCTCACCTGCCCCGTCTG CCTGAAGTTGCTCACCTCGCCCACAACGCTGCCGTGTTACCACACATCCTGEST: gi|76923847|gb|DV169691.1|DV169691
genomic: CTGGTGCTCAACCTGCAGAAGATGGAGCTGGAGCTCACCTGCCCCGTCTGgtgggtcaag ... tgtttgtcagCCTGAAGTTGCTCACCTCGCCCACAACGCTGCCGTGTTACCACACATCCTG
EST: CTGGTGCTCAACCTGCAGAAGATGGAGCTGGAGCTCACCTGCCCCGTCTG CCTGAAGTTGCTCACCTCGCCCACAACGCTGCCGTGTTACCACACATCCTGEST: gi|211129939|gb|FL016639.1|FL016639
genomic: CTGGTGCTCAACCTGCAGAAGATGGAGCTGGAGCTCACCTGCCCCGTCTGgtgggtcaag ... tgtttgtcagCCTGAAGTTGCTCACCTCGCCCACAACGCTGCCGTGTTACCACACATCCTG
EST: CTGGTGCTCAACCTGCAGAAGATGGAGCTGGAGCTCACCTGCCCCGTCTG CCTGAAGTTGCTCACCTCGCCCACAACGCTGCCGTGTTACCACACATCCTGEST: gi|91872021|gb|EB401978.1|EB401978
genomic: CTGGTGCTCAACCTGCAGAAGATGGAGCTGGAGCTCACCTGCCCCGTCTGgtgggtcaag ... tgtttgtcagCCTGAAGTTGCTCACCTCGCCCACAACGCTGCCGTGTTACCACACATCCTG
EST: CTGGTGCTCAACCTGCAGAAGATGGAGCTGGAGCTCACCTGCCCCGTCTG CCTGAAGTTGCTCACCTCGCCCACAACGCTGCCGTGTTACCACACATCCTGEST: gi|78088729|gb|DV517122.1|DV517122
genomic: CTGGTGCTCAACCTGCAGAAGATGGAGCTGGAGCTCACCTGCCCCGTCTGgtgggtcaag ... tgtttgtcagCCTGAAGTTGCTCACCTCGCCCACAACGCTGCCGTGTTACCACACATCCTG
EST: CTGGTGCTCAACCTGCAGAAGATGGAGCTGGAGCTCACCTGCCCCGTCTG CCTGAAGTTGCTCACCTCGCCCACAACGCTGCCGTGTTACCACACATCCTGEST: gi|78073936|gb|DV502370.1|DV502370
genomic: CTGGTGCTCAACCTGCAGAAGATGGAGCTGGAGCTCACCTGCCCCGTCTGgtgggtcaag ... tgtttgtcagCCTGAAGTTGCTCACCTCGCCCACAACGCTGCCGTGTTACCACACATCCTG
EST: CTGGTGCTCAACCTGCAGAAGATGGAGCTGGAGCTCACCTGCCCCGTCTG CCTGAAGTTGCTCACCTCGCCCACAACGCTGCCGTGTTACCACACATCCTG
genomic: CTGGTGCTCAACCTGCAGAAGATGGAGCTGGAGCTCACCTGCCCCGTCTGgtgggtcaag ... tgtttgtcagCCTGAAGTTGCTCACCTCGCCCACAACGCTGCCGTGTTACCACACATCCTG
gcattcgtatactgaacttcttggtcgtctgacggtgaaattttttgtttgtcagCCTGAAGTTGCTCACCTCGCCCACAACGCTGCCGTGTTACCACACATCCTGCAG
gtctgac putative branch site (score: 7)
ttttttgttt putative PPT
tgaaattttttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatggcgaccttcgatccatttagagtaaaatgaggggataattgcattcgtatactgaacttcttggtcgtctgacggtgaaattttttgtttgtcagCCTGAAGTTGCTCACCTCGCCCACAACGCTGCCGTGTTACCACACATCCTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - gagtaaaa
- - - - - - - - - - - - - - - - - - - - - - tgcattc