1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtttgcaagtgaactccgggagtaaataagccaaaccatcaacacatccttttggtgtactgaccgcataacttttctcgtctgtagGCACCAGGTCTGTTTGCTGGGTTGACCTTCTACTTCAGTGGCCATTTCATGCCGGGATACAGGGCCAACCTCGAAGATTTGATCGCCGCAGCAGGGGGGT
species | Zea mays |
transcript | GRMZM2G052688_T01 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: ATGGCTCTGTCGACGGCCCTCGCTCAGGAAGGCTCCGAGCGATGCAGCAG GCACCAGGTCTGTTTGCTGGGTTGACCTTCTACTTCAGTGGCCATTTCATGEST: gi|76293061|gb|DV032629.1|DV032629
genomic: ATGGCTCTGTCGACGGCCCTCGCTCAGGAAGGCTCCGAGCGATGCAGCAGgtttgcaagt ... tcgtctgtagGCACCAGGTCTGTTTGCTGGGTTGACCTTCTACTTCAGTGGCCATTTCATG
EST: ATGGCTCTGTCGACGGCCCTCGCTCAAGAAGGCTCCGAGCGATGCAGCAG GCACCAGGTCTGTTTGCTGGGTTTGACCCTCTACEST: gi|91051894|gb|EB162312.1|EB162312
genomic: ATGGCTCTGTCGACGGCCCTCGCTCAGGAAGGCTCCGAGCGATGCAGCAGgtttgcaagt ... tcgtctgtagGCACCAGGTCTGTTTGCTGGGTT-GACCTTCTAC
EST: ATGGCTCTGTCGACGGCCCTCGCTCAGGAAGGCTCCGAGCGATGCAGCAG GCACCAGGTCTGTTTGCTGGGTTGACCTTCTACTTCAGTGGCCATTTCATGEST: gi|76923845|gb|DV169690.1|DV169690
genomic: ATGGCTCTGTCGACGGCCCTCGCTCAGGAAGGCTCCGAGCGATGCAGCAGgtttgcaagt ... tcgtctgtagGCACCAGGTCTGTTTGCTGGGTTGACCTTCTACTTCAGTGGCCATTTCATG
EST: ATGGCTCTGTCGACGGCCCTCGCTCAGGAAGGCTCCGAGCGATGCAGCAG GCACCAGGTCTGTTTGCTGGGTTGACCTTCTACTTCAGTGGCCATTTCATG
genomic: ATGGCTCTGTCGACGGCCCTCGCTCAGGAAGGCTCCGAGCGATGCAGCAGgtttgcaagt ... tcgtctgtagGCACCAGGTCTGTTTGCTGGGTTGACCTTCTACTTCAGTGGCCATTTCATG
aaaccatcaacacatccttttggtgtactgaccgcataacttttctcgtctgtagGCACCAGGTCTGTTTGCTGGGTTGACCTTCTACTTCAGTGGCCATTTCATGCCGGGATACAGGGCCAACCTCGAAGATTTGATCGCCGCAGCAGGGGGGT
cttttctcgtctgt CT-rich tract
ataactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgcaagtgaactccgggagtaaataagccaaaccatcaacacatccttttggtgtactgaccgcataacttttctcgtctgtagGCACCAGGTCTGTTTGCTGGGTTGACCTTCTACTTCAGTGGCCATTTCATGCCGGGATACAGGGCCAACCTCGAAGATTTGATCGCCGCAGCAGGGGGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA