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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGAGAAGACAAATACTCTCATAATGGATATTCTGAAAAAGAAGCCATGCCCAGCTACTTCAGCATGCCAACAGGATAATTTGTCTTTCATCGATCCAGgttaagatctgctatgcaggaataaatttgatgttttatattcactgtttttgtttcacaagcttgtctgttgcactctcactaagatttcttctttgatgcag

Basic information

species Zea mays
transcript GRMZM2G033828_T03
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G033828_T03 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os08g42600.2 (Oryza sativa), 5'ss of exon 8
CTGGAGAAGACAAATACTCTCATAATGGATATTCTGAAAAAGAAGCCATGCCCAGCTACTTCAGCATGCCAACAGGATAATTTGTCTTTCATCGATCCAGgttaagatctgctatgcaggaataaatttgatgttttatattcactgtttttgtttcacaagcttgt------ctgttgcactctcactaagatttcttctttgatgcag
 | ||||||||||||||||||||| ||||||||||||| ||||| ||||| |||||| |||||| ||| || |||||||  |||||||| || |||||||||    || || | | ||   | || | |    ||  ||| ||   |||| |||||||  | |||||      |  |  ||   ||  |     || || ||||||||||
ATCGAGAAGACAAATACTCTCATAGTGGATATTCTGAAGAAGAAACCATGTCCAGCTGCTTCAGAATGTCAGCAGGATAGGTTGTCTTTTATTGATCCAGgtatgaatgtgatcttcaaacacaattat----ttccatagtcgaggtttgtgtttcaggaacttgttgccatccatctcaacttccttgcttcttgttgtttgatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32930142|gb|CF034954.1|CF034954
EST:     CCCAGCTACTTCAGCATGCCAACAGGATAATTTGTCTTTCATCGATCCAG                         AAGGCTTGACAGTTTTTAAGGATTTGCTTCAGGGAGACTCATTGAAACCAA
genomic: CCCAGCTACTTCAGCATGCCAACAGGATAATTTGTCTTTCATCGATCCAGgttaagatct ... tttgatgcagAAGGCTTGACAGTTTTTAAGGATTTGCTTCAGGGAGACTCATTGAAACCAA
EST: gi|71434758|gb|DR815808.1|DR815808
EST:     CCCAGCTACTTCAGCATGCCAACAGGATAATTTGTCTTTCATCGATCCAG                         AAGGCTTGACAGTTTTTAAGGATTTGCTTCAAGGAGACTCATTGAAACCAA
genomic: CCCAGCTACTTCAGCATGCCAACAGGATAATTTGTCTTTCATCGATCCAGgttaagatct ... tttgatgcagAAGGCTTGACAGTTTTTAAGGATTTGCTTCAGGGAGACTCATTGAAACCAA
EST: gi|32932368|gb|CF037180.1|CF037180
EST:     CCCAGCTACTTCAGCATGCCAACAGGATAATTTGTCTTTCATCGATCCAG                         AAGGCTTGACAGTTTTTAAGGATTTGCTTCAGGGAGACTCATTGAAACCAA
genomic: CCCAGCTACTTCAGCATGCCAACAGGATAATTTGTCTTTCATCGATCCAGgttaagatct ... tttgatgcagAAGGCTTGACAGTTTTTAAGGATTTGCTTCAGGGAGACTCATTGAAACCAA