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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTGTGGATTTTTTCAAGGAGATGCCACAGTTCTGCATAAAGGTTGCACACATTTTGACTGGCCTATATGGTTCAGATTGGGAAAAAAGGCTTGAGgtatagtattatgtaattagtgtgctcccctgttttagaacccattttagaattgaacatgttttaactttctatcctaatgcatttccgtgttttgtgctcag

Basic information

species Zea mays
transcript GRMZM2G033828_T03
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G033828_T03 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os08g42600.2 (Oryza sativa), 5'ss of exon 4
CATTGTGGATTTTTTCAAGGAGATGCCACAGTTCTGCATAAAGGTTGCACACATTTTGACTGGCCTATATGGTTCAGATTGGGAAAAAAGGCTTGAGgtatagtattatgtaat-tagtgtgctcccctgttttagaacccattttagaattgaacatgt-------tttaactttctatc--ctaatgcatttccgtgttttgtgctcag
||| || ||||| ||||||||||||||||||||||||||||||||||      || || |||| |||||||||||||||||||| || ||||||||||||       |  |  | |||| ||||||||||||| | | |  | || |||| ||||||  |       |||  | |  || |  |||| ||||||   |   || || ||||
CATCGTCGATTTCTTCAAGGAGATGCCACAGTTCTGCATAAAGGTTGGGTCTGTTCTGGCTGGTCTATATGGTTCAGATTGGGAGAAGAGGCTTGAGgtacccgtccagattttgtagtatgctcccctgtttgaaatctgaattcagaactgaacacatgtttgtgtttgccctgttaccgactaacgcatttatttcccttatgatcag

upper sequence: GRMZM2G033828_T03 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA13G26170.1 (Glycine max), 5'ss of exon 3
CATTGTGGATTTTTTCAAGGAGATGCCACAGTTCTGCATAAAGGTTGCACACATTTTGACTGGCCTATATGGTTCAGATTGGGAAAAAAGGCTTGAGgtatagtattatgtaattagtgtgctcccctgttttagaacccattttagaattgaacatgttttaactttctatcctaatgcatttccgtgttttgtgctcag
|||||  ||||||||||| ||  | ||||||||     | |||| ||  |  | ||| | |   ||||||||  ||||||||||||| ||||||||||||| |  | |    |  |   || |  | | ||  | |    || ||     |||    |||||   | | |||  ||||  | | ||  |    ||  | ||
CATTGCAGATTTTTTCAAAGAACTTCCACAGTTTGTTGTTAAGGCTGGTCCAACTTTAAGTAATCTATATGGCACAGATTGGGAAAACAGGCTTGAGgtattgactgagcagagaaccatgattgcat-ttgcaaagtttatattttttgtgaggtggttttgtttatttatt-taat-taatcccaagaaacgta-taag

upper sequence: GRMZM2G033828_T03 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA04G36700.2 (Glycine max), 5'ss of exon 4
CATTGTGGATTTTTTCAAGGAGATGCCACAGTTCTGCATAAAGGTTGCACACATTTTGACTGGCCTATATGGTTCAGATTGGGAAAAAAGGCTTGAGgtatagtattatgtaattagtgtgctcccctgttttagaacccattttagaattgaacatgttttaactttctatcctaatgcatttccgtgttttgtgctcag
|||||  ||||||||||| ||  | ||||||||     | |||| ||  |  | ||| | |   ||||||||  ||||||||||||| ||||||||||||| |  | |    |  |    | |  | | ||  | |    || ||     | |    |||||   | | |||   | |  | | ||  |    ||  | ||
CATTGCAGATTTTTTCAAAGAACTTCCACAGTTTGTTGTTAAGGCTGGTCCAACTTTAAGTAATCTATATGGCACAGATTGGGAAAACAGGCTTGAGgtattgactgagcagagaaccacgattgcat-ttgcaaagtttatattttttgttaggtggttttgtttatttatttgatt--aatcccaagaaacgta-taag

upper sequence: GRMZM2G033828_T03 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA15G36890.1 (Glycine max), 5'ss of exon 4
CATTGTGGATTTTTTCAAGGAGATGCCACAGTTCTGCATAAAGGTTGCACACATTTTGACTGGCCTATATGGTTCAGATTGGGAAAAAAGGCTTGAGgtat------agtattatgtaattagtgtgctcccctgttttagaacccattttagaa--ttgaacatgttttaactttctatcctaatgcattt-----ccgtgttttgtgctcag-------------
|||||  |||||||| || ||  | ||||||||     | || | ||  |  | ||| | |   ||||||||  ||||||||||||| |||||||||||||      || |       || | |||  |  |    ||||    |   | | |    |||   || | || | |   |    ||||    |      || |  ||| || |                
CATTGCAGATTTTTTTAAAGAACTTCCACAGTTTGTTGTTAAAGCTGGTCCAACTTTAAGTAATCTATATGGCACAGATTGGGAAAACAGGCTTGAGgtattgactgagcagagaaccatgactgtatttgcaaaatttatgttcttgtgtggtggtttgtttatttatttaatcattggaataattttctattaagccattctttatgttgctatttctatactag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71434758|gb|DR815808.1|DR815808
EST:     CACACATTTTGACTGGCCTATATGGTTCAGATTGGGAAAAAAGGCTTGAG                         TTGAAGGAACTGCAAGCGAATGTTGTCCATTTAAGCTTGCTAAGCAG
genomic: CACACATTTTGACTGGCCTATATGGTTCAGATTGGGAAAAAAGGCTTGAGgtatagtatt ... ttgtgctcagTTGAAGGAACTGCAAGCGAATGTTGTCCATTTAAGCTTGCTAAGCAG