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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTCCCCGGCTGGCTCGGTTCCCGAACCTCCCCGACATGTCTCCAAAGAAGGTTTCTGCTACCCATAACGTGTACGTCTCACCGCTACGGTCATCGAAGgtaagtaaaatagctgtcaattttttttgcagtgttgtggtttcaggtttcacctgactgagctattttttttgggcaatccttcatcaaatgcctgtgacaaactttataactgaactctccag

Basic information

species Zea mays
transcript GRMZM2G033828_T03
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G033828_T02 (Zea mays), 5'ss of exon 17
lower sequence: LOC_Os08g42600.2 (Oryza sativa), 5'ss of exon 16
ATCTCCCCGGCTGGCTCGGTTCCCGAACCTCCCCGACATGTCTCCAAAGAAGGTTTCTGCTACCCATAACGTGTACGTCTCACCGCTACGGTCATCGAAGgtaagt---aaaatagctgtcaattttttttgcagtgttgtg-gtttcaggtttcac--ctgactgagctattttttttg-ggcaatccttcatcaaatgcctgtgacaaactttataactgaactctccag
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ATCTCCTCGGCTATCTCGGTTTCCAAACCTTCCTGACATGTCTCCCAAGAAAGTTTCTGCTGCTCATAACGTATATGTTTCACCCTTGCGCACATCAAAGgtacgcctcaagaaataaactgatctcccttgtgaagtttaatgttgcatttataatgaccacctgaattttaactataatggtagtccttgatcaa-tgt-tgtgacat-tgcaataactgaatgtttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76933783|gb|DV173584.1|DV173584
EST:     AGGTTTCTGCTACCCATAACGTGTACGTCTCACCGCTACGGTCATCGAAG                         ATGGACACTCTTCTGTCCCCGAGCTCCAAGAGCTACTACGCGTGCGTCGG
genomic: AGGTTTCTGCTACCCATAACGTGTACGTCTCACCGCTACGGTCATCGAAGgtaagtaaaa ... aactctccagATGGACACTCTTCTGTCCCCGAGCTCCAAGAGCTACTACGCGTGCGTCGG
EST: gi|30031712|gb|CB833563.1|CB833563
EST:     AGGTTTCTGCTACCCATAACGTGTACGTCTCACCGCTACGGTCATCGAAG                         ATGGACACTCTTCTGTCCCCGAGCTCCAAGAGCTACTACGCGTGCGTCGGC
genomic: AGGTTTCTGCTACCCATAACGTGTACGTCTCACCGCTACGGTCATCGAAGgtaagtaaaa ... aactctccagATGGACACTCTTCTGTCCCCGAGCTCCAAGAGCTACTACGCGTGCGTCGGC
EST: gi|211494701|gb|FL093387.1|FL093387
EST:     AGGTTTCTGCTACCCATAACGTGTACGTCTCACCGCTMCGGTCATCGAAG                         ATGGACACTCTGCTGTCCCCGAGCTCCAAGAGCTACTACGCGTGCGTCGGC
genomic: AGGTTTCTGCTACCCATAACGTGTACGTCTCACCGCTACGGTCATCGAAGgtaagtaaaa ... aactctccagATGGACACTCTTCTGTCCCCGAGCTCCAAGAGCTACTACGCGTGCGTCGGC