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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagagtcgtgctgggcttgattggttgaggaacagtcacttgtcacttaggctaatccctgcattcgttttgttgattctatgtagCATTGTGGATTTTTTCAAGGAGATGCCACAGTTCTGCATAAAGGTTGCACACATTTTGACTGGCCTATATGGTTCAGATTGGGAAAAAAGGCTTGAG

Basic information

species Zea mays
transcript GRMZM2G033828_T03
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G033828_T03 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os08g42600.2 (Oryza sativa), 3'ss of exon 3
gtaagagtcgtgctgggcttgattggttgaggaacagtcac-ttgtcacttaggctaatccctgcattcgttttgttgattctatgtagCATTGTGGATTTTTTCAAGGAGATGCCACAGTTCTGCATAAAGGTTGCACACATTTTGACTGGCCTATATGGTTCAGATTGGGAAAAAAGGCTTGAG
|||||  |  |||  |  ||| || | |||||| ||||||  || ||   |  ||||||      |||   | | ||| |||| || ||||| || ||||| ||||||||||||||||||||||||||||||||||      || || |||| |||||||||||||||||||| || |||||||||
gtaaggat-atgcaagttttggtttgctgaggatcagtcatgttctccaatgcgctaatttgattattgactctattgtttctttgcagCATCGTCGATTTCTTCAAGGAGATGCCACAGTTCTGCATAAAGGTTGGGTCTGTTCTGGCTGGTCTATATGGTTCAGATTGGGAGAAGAGGCTTGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71434758|gb|DR815808.1|DR815808
EST:     GAAGATGGCAGTGTCTCACTTTGCCAGATTCTGAGGGCATCTAAGCTGAA                         CATTGTGGATTTTTTCAAGGAGATGCCACAGTTCTGCATAAAGGTTGCACA
genomic: GAAGATGGCAGTGTCTCACTTTGCCAGATTCTGAGGGCATCTAAGCTGAAgtaagagtcg ... ttctatgtagCATTGTGGATTTTTTCAAGGAGATGCCACAGTTCTGCATAAAGGTTGCACA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acagtcacttgtcacttaggctaatccctgcattcgttttgttgattctatgtagCATTGTGGATTTTTTCAAGGAGATGCCACAGTTCTGCATAAAGGTTGCACACATTTTGACTGGCCTATATGGTTCAGATTGGGAAAAAAGGCTTGAG
                                    ttttgtt  TA-rich tract