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gtaagtaaaatagctgtcaattttttttgcagtgttgtggtttcaggtttcacctgactgagctattttttttgggcaatccttcatcaaatgcctgtgacaaactttataactgaactctccagATGGACACTCTTCTGTCCCCGAGCTCCAAGAGCTACTACGCGTGCGTCGGCGAGAGCACCTACGCGTTCCAGAGCCCCTCCAAGGACCTGAAGGCTATCA
species | Zea mays |
transcript | GRMZM2G033828_T03 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: AGGTTTCTGCTACCCATAACGTGTACGTCTCACCGCTACGGTCATCGAAG ATGGACACTCTTCTGTCCCCGAGCTCCAAGAGCTACTACGCGTGCGTCGGEST: gi|30031712|gb|CB833563.1|CB833563
genomic: AGGTTTCTGCTACCCATAACGTGTACGTCTCACCGCTACGGTCATCGAAGgtaagtaaaa ... aactctccagATGGACACTCTTCTGTCCCCGAGCTCCAAGAGCTACTACGCGTGCGTCGG
EST: AGGTTTCTGCTACCCATAACGTGTACGTCTCACCGCTACGGTCATCGAAG ATGGACACTCTTCTGTCCCCGAGCTCCAAGAGCTACTACGCGTGCGTCGGCEST: gi|211494701|gb|FL093387.1|FL093387
genomic: AGGTTTCTGCTACCCATAACGTGTACGTCTCACCGCTACGGTCATCGAAGgtaagtaaaa ... aactctccagATGGACACTCTTCTGTCCCCGAGCTCCAAGAGCTACTACGCGTGCGTCGGC
EST: AGGTTTCTGCTACCCATAACGTGTACGTCTCACCGCTMCGGTCATCGAAG ATGGACACTCTGCTGTCCCCGAGCTCCAAGAGCTACTACGCGTGCGTCGGC
genomic: AGGTTTCTGCTACCCATAACGTGTACGTCTCACCGCTACGGTCATCGAAGgtaagtaaaa ... aactctccagATGGACACTCTTCTGTCCCCGAGCTCCAAGAGCTACTACGCGTGCGTCGGC
tttgggcaatccttcatcaaatgcctgtgacaaactttataactgaactctccagATGGACACTCTTCTGTCCCCGAGCTCCAAGAGCTACTACGCGTGCGTCGGCGAGAGCACCTACGCGTTCCAGAGCCCCTCCAAGGACCTGAAGGCTATCA
ttataac putative branch site (score: 2)
ctctcc putative PPT
aaactttataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtaaaatagctgtcaattttttttgcagtgttgtggtttcaggtttcacctgactgagctattttttttgggcaatccttcatcaaatgcctgtgacaaactttataactgaactctccagATGGACACTCTTCTGTCCCCGAGCTCCAAGAGCTACTACGCGTGCGTCGGCGAGAGCACCTACGCGTTCCAGAGCCCCTCCAAGGACCTGAAGGCTATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG