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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGGGACTGGACGAGAGCACGACGAGGCAGGCAATGCAGCTCTTGAAGGAGACCAATAACATTCTCAAGTCCAGCATGTCTTCCTTGGGCGGCGGATCGgtaagattgcattttctttgcctctggcatagttaatatttcttccatccaattccaggaccatgatgtactgctaaaactcatgcctgctacctattggatttatgtgtag

Basic information

species Zea mays
transcript GRMZM2G033828_T03
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G033828_T03 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os08g42600.2 (Oryza sativa), 5'ss of exon 2
GCTGGGACTGGACGAGAGCACGACGAGGCAGGCAATGCAGCTCTTGAAGGAGACCAATAACATTCTCAAGTCCAGCATGTCTTCCTTGGGCGGCGGATCGgtaagattgcattttctttgcctctggcatagttaatat-ttcttccatccaattccagga-ccatga-tgtactgctaaaactcatgc--ctgctacctattggatttatgtgtag
||| || |||||||||||||  |||||||||||||||||||| || ||||||| ||| | ||| |||   ||||||||||| ||||||||| | |||||||||| ||||||  ||| |   || | |  ||   | |   | ||||||| |     ||||    |  | |  |   ||||      ||   |||| | | || |  || ||||    
GCTTGGGCTGGACGAGAGCATAACGAGGCAGGCAATGCAGCTGTTCAAGGAGAGCAAGAGCATCCTCCTATCCAGCATGTCATCCTTGGGCAGTGGATCGgtaa-attgcaaattcctcatctgtagtttataaacttcatgcttccattctgccacaggggttacaactaaataactaatgtatgtgtttctgcaaaccatggtgttaatgtag--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71757366|gb|DR955303.1|DR955303
EST:     AGACCAATAACATTCTCAAGTCCAGCATGTCTTCCTTGGGCGGCGGATCG                         CCCGAGGAGATCGAGAGGTTCTGGTCTGCCTGTGTTCTGTACTGTGTGTCA
genomic: AGACCAATAACATTCTCAAGTCCAGCATGTCTTCCTTGGGCGGCGGATCGgtaagattgc ... ttatgtgtagCCCGAGGAGATCGAGAGGTTCTGGTCTGCCTGTGTTCTGTACTGTGTGTCA