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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTGTCAAATGTATCAGCGCTCTGCTGATATGGGTCTTGGTGTGCCATTTAACATTGCTTCTTATGCTTTATTGACATGCATGATTGCTCATGTTTGTGgtatgtatttatttctactatgagaatgtaaacctttgaaataagaggatctagttataatttctccatagttctatttcatttctgtcctggcattggcatcatgagttatcaatcatctacacccttttaaaaatccctctacattaatttgcctgtacag

Basic information

species Vitis vinifera
transcript Vv18s0001g12940.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g12940.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os11g29390.1 (Oryza sativa), 5'ss of exon 9
TCCTGTCAAATGTATCAGCGCTCTGCTGATATGGGTCTTGGTGTGCCATTTAACATTGCTTCTTATGCTTTATTGACATGCATGATTGCTCATGTTTGTGgtatgtatttattt---ctactatgagaatgta-aacctttgaaataagaggatctagttataat-ttctccatagttctatttcatttctgtcctggcattggcatcatgagttatcaatcatctacacccttttaaaaatccctctacattaatttgcctgtacag
|| || || |||||||| ||||||||||||||||| |||||||| ||||| |||||||| || ||| || |  |||||| |||||||||||||||||| |||||||  |  | |   || ||||| || || | || |    |  |   |   | | | | || | |||  | ||   || |||  ||  ||   | | ||                                                                   
TCGTGCCAGATGTATCAACGCTCTGCTGATATGGGACTTGGTGTTCCATTCAACATTGCATCATATTCTCTTCTGACATACATGATTGCTCATGTTTGCGgtatgttatcttctaccctgctatgtgactggataatcccaaaggtctaaccttattgatgtattgttcagcgtaagactgttt-gttgttgatgttgtat-------------------------------------------------------------------

upper sequence: Vv18s0001g12940.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os12g26060.1 (Oryza sativa), 5'ss of exon 7
TCCTGTCAAATGTATCAGCGCTCTGCTGATATGGGTCTTGGTGTGCCATTTAACATTGCTTCTTATGCTTTATTGACATGCATGATTGCTCATGTTTGTGgtatgtatttatttctactatgagaatgtaaacctttgaaataagaggatctagttataatttctccatagttctatttcatttctgtcctggcattggcatcatgagttatcaatcatctacacccttttaaaaatccctctacattaatttgcctgtacag
|| || || ||||| || ||||||||||||||||| || ||||||||||| |||||||| || ||| || |  ||||||| |||||||| || || ||||||||||  | | ||              | | | ||| | |         |  |||||   || | | ||     |    |  |     || | |       ||   | ||   ||     |||                                       
TCATGCCAGATGTACCAACGCTCTGCTGATATGGGGCTCGGTGTGCCATTCAACATTGCATCATATTCTCTTCTGACATGTATGATTGCACAAGTGTGTGgtatgttctcacttgc------------ttatctttttaca---------ccggttattcgtttttcctaaagtcaa---agcttcaaactagaacccattgcacatgctaattattcgtaaca---------------------------------------

upper sequence: Vv18s0001g12940.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G139880_T01 (Zea mays), 5'ss of exon 8
TCCTGTCAAATGTATCAGCGCTCTGCTGATATGGGTCTTGGTGTGCCATTTAACATTGCTTCTTATGCTTTATTGACATGCATGATTGCTCATGTTTGTGgtatgtatttatttctactatgagaatgtaaacctttgaaataagaggatctagttataatttctccatagttctatttcatttctgtcctggcattggcatcatgagttatcaatcatctacacccttttaaaaatccctctacattaatttgcctgtacag
||||| || |||||||| |||||||| || ||||| |||||||| ||||| ||||| || || ||| || | |||||||  ||||||||||| |||||||||| ||  |||| |  |  |    ||| |      |      ||     | || |    |  |    | |   ||  ||  ||   || |  | | ||   |  ||                                                         
TCCTGCCAGATGTATCAACGCTCTGCAGACATGGGGCTTGGTGTTCCATTCAACATCGCATCATATTCTCTTTTGACATATATGATTGCTCAAGTTTGTGgtaggttcttatatgcatcactgtaatatttctactcagtgcaacg---tttattgtgcaccttaatagaaaccttcttggtt---gtacatgtactgtatttgtg---------------------------------------------------------

upper sequence: Vv18s0001g12940.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G005990_T01 (Zea mays), 5'ss of exon 9
TCCTGTCAAATGTATCAGCGCTCTGCTGATATGGGTCTTGGTGTGCCATTTAACATTGCTTCTTATGCTTTATTGACATGCATGATTGCTCATGTTTGTGgtatgtatttatttctactatgagaatgtaaacctttgaaataagaggatctagttataatttctccatagttctatttcatttctgtcctg-gcattggcatcatgagttatcaatcatctacacccttttaaaaatccctctacattaatttgcctgtacag
|| || || |||||||| |||||||| || ||||| |||||||| ||||| ||||| || || ||| || |  |||||| |||||||||||| |||||||||| || || | | |   ||    ||| |   || ||     ||     | || |    |  |    | |   ||  ||  ||   || |||   ||  | ||  |                                                          
TCTTGCCAGATGTATCAACGCTCTGCAGACATGGGGCTTGGTGTTCCATTCAACATCGCATCATATTCTCTCCTGACATACATGATTGCTCAAGTTTGTGgtaggttttaaatgcc-ttactctaatatttccccttagtccaatg---tttattgtgcaccttaatacaaaccttattggtt---gtactgtatatcagtattcta---------------------------------------------------------

upper sequence: Vv18s0001g12940.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA06G01280.1 (Glycine max), 5'ss of exon 9
TCCTGTCAAATGTATCAGCGCTCTGCTGATATGGGTCTTGGTGTGCCATTTAACATTGCTTCTTATGCTTTATTGACATGCATGATTGCTCATGTTTGTGgtatgtatttatttctactatgagaatgtaaacctttgaaataagaggatctagttataatttctccatagttctatttcatttctgtcctggca-ttggcatcatgagttatcaatcatctacacccttttaaaaatccctctacattaatttgcctgtacag
|| ||||||||||||||||| |||||||||||||| || ||  | |||||||| ||||| ||||||||  | |||||||||||||||||||||||||||||||||   | |||    || | |     || |  |||| | |      || | ||     |   | ||    | ||| |  |  || |  | | |  ||  |                                                              
TCATGTCAAATGTATCAGCGATCTGCTGATATGGGCCTGGGCATTCCATTTAATATTGCATCTTATGCCCTTTTGACATGCATGATTGCTCATGTTTGTGgtatgc--tcattaagtcttttatttattatatttttggactttagttatgt-gtggaggtcaattcagttctatatatattcccttttttagtaactgagaa-------------------------------------------------------------

upper sequence: Vv18s0001g12940.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA04G01240.1 (Glycine max), 5'ss of exon 9
TCCTGTCAAATGTATCAGCGCTCTGCTGATATGGGTCTTGGTGTGCCATTTAACATTGCTTCTTATGCTTTATTGACATGCATGATTGCTCATGTTTGTGgtatgtatttatttctactatgagaatgtaaacctttgaaataagaggatctagttataatttctccatagttctatttcatttctgtcctggcattggcatcatgagttatcaatcatctacacccttttaaaaatccctctacattaatttgcctgtacag
|| ||||||||||||||||| |||||||| ||||| || || || |||||||| ||||| ||||||||  | ||||||||||||||||||||||||||||||||| |         | |||   |   |   | || ||  |||    || ||||  || |     |||  |    |||  |   |||  | | |  |  |   |     ||                                                   
TCATGTCAAATGTATCAGCGATCTGCTGACATGGGCCTGGGCGTTCCATTTAATATTGCATCTTATGCCCTTTTGACATGCATGATTGCTCATGTTTGTGgtatgcaa--------attattgaagcatttgctttagacttaaat--atttagtc-tattgataacatgttgtggttttgtgggtgtaattgga--gataatgtatcccatt--------------------------------------------------

upper sequence: Vv18s0001g12940.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA11G12280.1 (Glycine max), 5'ss of exon 8
TCCTGTCAAATGTATCAGCGCTCTGCTGATATGGGTCTTGGTGTGCCATTTAACATTGCTTCTTATGCTTTATTGACATGCATGATTGCTCATGTTTGTGgtatgtat-ttatttctactatgagaatgtaaacctttgaaataagaggatctagttataatttctccatagttctat---ttcatttctgtcctggcattggcatcatgagttatcaatcatctacacccttttaaaaatccctctacattaatttgcctgtacag
|| ||||||||||||||||| ||||| || ||||| || ||||| |||||||| ||||| ||||||||  |  |||||||||||||||||||||||||||||||| |  ||||  |  || |    |     |  |||| | | ||| |  |  |  ||  |   ||| || ||  ||   |||  |   ||  |  ||||                                                                  
TCATGTCAAATGTATCAGCGATCTGCCGACATGGGCCTGGGTGTCCCATTTAATATTGCATCTTATGCGCTCCTGACATGCATGATTGCTCATGTTTGTGgtatgcaaattatgccagctttcgctagacttaaatttgtattgagacgcacatgccatcttaaatcc-tactttcatgggttcgatagagttttctcatt------------------------------------------------------------------

upper sequence: Vv18s0001g12940.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA12G04480.1 (Glycine max), 5'ss of exon 9
TCCTGTCAAATGTATCAGCGCTCTGCTGATATGGGTCTTGGTGTGCCATTTAACATTGCTTCTTATGCTTTATTGACATGCATGATTGCTCATGTTTGTGgtatgtat-ttatttctactatgagaatgtaaacctttgaaataagaggatcta--gttataatttc----tccatagttctatttcatttctgtcctggcattggcatcatgagttatcaatcatctacacccttttaaaaatccctctacattaatttgcctgtacag----------------------------
|| ||||||||||||||||| ||||| || ||||| || ||||| |||||||| ||||| ||||||||  |  ||||||||||||| |||||||||||||||||| |  ||||  |  || ||  |   | ||  ||  |   |   | |  ||   |  ||| | |    | ||| | |  | |  |  | | || | |  |     |   ||  ||   | | | || |       |||| |  |  || ||  ||| | |||  ||                             
TCATGTCAAATGTATCAGCGATCTGCCGACATGGGCCTGGGTGTCCCATTTAATATTGCATCTTATGCACTCCTGACATGCATGATCGCTCATGTTTGTGgtatgcaaattatgccagctttgctagacttaaatttgtactcagacgcacataccatcttaaatccgactttcatgggttcaatagagatttctcattgtttgattgtagggaaatac--agcttttatataaaaggaaaattgacattagat--attggactgatcaatccatctgtcatatcctgtttttgtcag

upper sequence: Vv18s0001g12940.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT4G34570.1 (Arabidopsis thaliana), 5'ss of exon 10
TCCTGTCAAATGTATCAGCGCTCTGCTGATATGGGTCTTGGTGTGCCATTTAACATTGCTTCTTATGCTTTATTGACATGCATGATTGCTCATGTTTGTGgtat-gtatttatttctactatgagaatgtaaacctttgaaataagaggatctagttataatttctccatagttctatttcatttctgtcctggcattggcatcatgagttatcaatcatctacacccttttaaaaatccctctacattaatttgcctgtacag
|| ||||||||||||||||| || || ||||||||||| || || || ||||||||||| || ||  |  |  | ||||||||  ||||||| || || ||||  ||  | ||| | ||||| | |     ||  ||   | |   |  ||| ||| ||  | |    ||||||   |  ||||    | | |                                                                       
TCATGTCAAATGTATCAGCGTTCAGCCGATATGGGTCTCGGCGTACCGTTTAACATTGCCTCATACTCCCTTCTTACATGCATTCTTGCTCACGTCTGCGgtaaagttctaattcccactataaaaggagcaaatttgtgatttcaaatatc-agtcatcgtctg---atagtttgttgacatt---atgcag-----------------------------------------------------------------------