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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCAAGAATAAACCTGATGACAGGCGTATTATACTCTCTTCTTGGAATCCATCTGATCTTAAATTGATGGCACTTCCGCCTTGCCACATGTTTGCACAAgtttggaacatgctaattctctttatcatttttttcctcattttacggtagtaaaatgcaatgtttcttatttgcgtatttctacattgcag

Basic information

species Vitis vinifera
transcript Vv18s0001g12940.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g12940.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os11g29390.1 (Oryza sativa), 5'ss of exon 8
GATCAAGAATAAACCTGATGACAGGCGTATTATACTCTCTTCTTGGAATCCATCTGATCTTAAATTGATGGCACTTCCGCCTTGCCACATGTTTGCACAAgtttggaacatgcta--attctctttatcatttttttc--ctcatt-ttacggtagtaaaatgcaatgtttcttatt-tgcgtatttctacattgcag--
|||||||||||| ||||| || ||||| ||||| || ||| | |||||||| || ||||| ||   |||||| ||||| |||||||||||||||||||||||| | |   |||    ||| | |||| ||   |||     | ||| |   | || |  ||     |  ||  |||  | |    |  || | ||||   
GATCAAGAATAATCCTGACGATAGGCGAATTATCCTATCTGCGTGGAATCCTTCAGATCTCAAGAAGATGGCCCTTCCTCCTTGCCACATGTTTGCACAAgttagtatagtgcctctattttttttaacaaaatttgagaataattgtcttgctattggaaccttttacttgatataatacaatataatataatgcatcc

upper sequence: Vv18s0001g12940.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G139880_T01 (Zea mays), 5'ss of exon 7
GATCAAGAATAAACCTGATGACAGGCGTATTATACTCTCTTCTTGGAATCCATCTGATCTTAAATTGATGGCACTTCCGCCTTGCCACATGTTTGCACAAgtttggaacatgctaattct-----------ctttatcatttttttcctcatttt-acggtagtaaaatgcaatgtttcttatttgcgtatttctacattgcag
||| ||||| || ||||||||| | || || ||  | ||  | |||||||| || ||||| ||   |||||| ||||| |||||||||||||||||||||||| | |  ||  |  | ||           ||   | |  | ||  |||||||| ||  |   |   ||       |  || |   | |||   || ||    
GATTAAGAACAATCCTGATGACCGCCGAATAATTTTATCGGCGTGGAATCCTTCAGATCTCAAGAAGATGGCTCTTCCTCCTTGCCACATGTTTGCACAAgttagtataatttttctgcttgagttaaggtctaagttaactattggctcattttgacttttccatggtgtgcatccttgtactaatgcattctaacttt----

upper sequence: Vv18s0001g12940.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G005990_T01 (Zea mays), 5'ss of exon 8
GATCAAGAATAAACCTGATGACAGGCGTATTATACTCTCTTCTTGGAATCCATCTGATCTTAAATTGATGGCACTTCCGCCTTGCCACATGTTTGCACAAgtt--tggaacatgctaattctcttta---------tcatttttttcctcattt----tacggtagt------aaaatgcaatgtttctt-atttgcgtatttcta-cattgcag---------------------------------------------------------------
|||||||||| | ||||| ||| | || || ||  | ||  | |||||||| || ||||| ||   |||||| ||||| |||||||||||||||||||||||   |  ||  ||  |  |   ||||         |  |||||||   | |||    ||| ||||       || ||    | |||||| ||     | ||| || ||||||                                                                 
GATCAAGAATGATCCTGACGACCGTCGAATAATTTTGTCGGCGTGGAATCCTTCAGATCTCAAGAAGATGGCTCTTCCTCCTTGCCACATGTTTGCACAAgtcagtataatctgtcagcttggtttaagttgaaattagtttttttttacttttaaattacagtagactggtgaacataagttttttcttgataattatgtttttaacattgcttgcattttatttttgatctttttgtcaactaaaaacatttgcattcaacctatccaccttccag

upper sequence: Vv18s0001g12940.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA11G12280.1 (Glycine max), 5'ss of exon 7
GATCAAGAATAAACCTGATGACAGGCGTATTATACTCTCTTCTTGGAATCCATCTGATCTTAAATTGATGGCACTTCCGCCTTGCCACATGTTTGCACAAgtttggaac-atgct---aattctctttatcatttttttcctcattttacggtagtaaaatgcaatgtttcttatttgcgtatttctacattgcag
||| ||| | || ||||||||  |  | || || |||||| |||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||  | | | ||  |     ||||||||   |    | || |  | |  |  |   |   ||     || ||| | |   | ||| |    |||||
GATAAAGCACAATCCTGATGATCGAAGGATCATTCTCTCTGCTTGGAATCCATCTGATCTTAAGTTGATGGCACTTCCACCCTGCCACATGTTTGCACAAgtccgcagctatatttgggtttctctttggaagaactctctttttctctca-tgaaattttgttgacttccttttattgttttttttttcctgcag

upper sequence: Vv18s0001g12940.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA04G01240.1 (Glycine max), 5'ss of exon 8
GATCAAGAATAAACCTGATGACAGGCGTATTATACTCTCTTCTTGGAATCCATCTGATCTTAAATTGATGGCACTTCCGCCTTGCCACATGTTTGCACAAgtttggaacatg-ctaattctctttatcatttttttcctcattttacggtagtaaaatgcaatgtt--tcttatttgcgtatttctacattgcag
||| ||| |||| ||||||||  |||| ||||| |||||| | ||||||||||||||||||||||| ||||||||||| || ||||||||||||||||| || || | | |   | |   | ||  |       || | | ||  ||  |  |   |   | || |  | ||| ||    | || | ||      
GATAAAGCATAATCCTGATGATCGGCGAATTATTCTCTCTGCATGGAATCCATCTGATCTTAAATTAATGGCACTTCCACCCTGCCACATGTTTGCACAGgtctgcagcttaattcaggtttttctttgaaaaattgccccttccacacttattccacatattgatatttttaatttttaacttttgcag-----

upper sequence: Vv18s0001g12940.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA12G04480.1 (Glycine max), 5'ss of exon 8
GATCAAGAATAAACCTGATGACAGGCGTATTATACTCTCTTCTTGGAATCCATCTGATCTTAAATTGATGGCACTTCCGCCTTGCCACATGTTTGCACAAgtttggaac-atgct-aattctctttatcatttttttcctcattttacggtagtaaaatgcaatgtttcttatttgcgtatttctacattgcag
||| ||| |||| ||  ||||  |  | || || |||||  | ||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||  | | | ||  |    | ||| | |        ||    |||| |  |  | || |    |     |  |||   | ||| | |  || ||
GATAAAGCATAATCCCAATGATCGAAGGATCATTCTCTCAGCGTGGAATCCATCTGATCTTAAATTGATGGCACTTCCACCCTGCCACATGTTTGCACAGgtccgcagctatatttgggtttctctttggaagagctctctctttttctctcatgaagttttgtcaacttccttttattgttttttccctgtag

upper sequence: Vv18s0001g12940.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA06G01280.3 (Glycine max), 5'ss of exon 8
GATCAAGAATAAACCTGATGACAGGCGTATTATACTCTCTTCTTGGAATCCATCTGATCTTAAATTGATGGCACTTCCGCCTTGCCACATGTTTGCACAAgtttggaacatgct--aattctctttatcatttttttcctcattttacggtagtaaaatgcaatgtttcttatttgcgtatttctacattgcag
||| |||  ||| ||||||||  |||| || || |||||| | |||||||||   ||||||||||| ||||||||||| || ||||||||||||||||| || || | | |  |  |  | | | | | |    || || | |       |   |       || ||| | ||||    | || | ||      
GATAAAGCGTAATCCTGATGATCGGCGAATCATTCTCTCTGCATGGAATCCAGTGGATCTTAAATTAATGGCACTTCCACCCTGCCACATGTTTGCACAGgtctgcagcttaattcaggtttttctttgaaaaattgccccttccacatattccacctattgatatttttaattttta-acttttgcag-----

upper sequence: Vv18s0001g12940.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT2G16370.1 (Arabidopsis thaliana), 5'ss of exon 8
GATCAAGAATAAACCTGATGACAGGCGTATTATACTCTCTTCTTGGAATCCATCTGATCTTAAATTGATGGCACTTCCGCCTTGCCACATGTTTGCACAAgtttggaacatgctaattctctttatcatttttttcctcattttacggt-agtaaaatgcaatgtttcttatttgcgtatttctacattgcag
 |||||||| || ||||||||  ||||||||||| | ||  |||||||||| |||||||||||  ||||||||||||| || ||||| ||||||||||||||       |||| | ||    || | ||| | ||  |  |  |||  | |||   ||    | ||| || |||  | |              
AATCAAGAACAATCCTGATGATCGGCGTATTATAATGTCAGCTTGGAATCCTTCTGATCTTAAGCTGATGGCACTTCCTCCATGCCATATGTTTGCACAAgta------atgccactttatcttctaattctgttgtttctcctacaatgagtttgattactttttttttttttttgcag-------------