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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCTGCAGAAGAAAGACATTCATATATGGGATGGCAATGCATCCAGAGAGTACCTTGACAGGCAACTACTTGGCTATTGGAATCTgttctattttagaactgctttgtcctgcagggtaacttatatatctatatgttgcag

Basic information

species Vitis vinifera
transcript Vv18s0001g12940.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g12940.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os11g29390.1 (Oryza sativa), 5'ss of exon 6
GTGCTGCAGAAGAAAGACATTCATATATGGGATGGCAATGCATCCAGAGAGTACCTTGACAGGCAACTA-CTTGGCT--------ATTGGAATCTgttctattttagaactgctttgtcctgcagggtaacttatatatctatatgttgcag--------
||  | ||  |||||| ||||||||| |||||||||||||| || |||||||| ||||||||| |  || ||||| |         | |  |     |  || ||     |  |   ||  |     | |   || |  | | || || | |        
GTTTTACAAGAGAAAGGCATTCATATTTGGGATGGCAATGCTTCGAGAGAGTATCTTGACAGgtatttatcttggatccacactagtcgagaaacaatggatattgctgttcttggttctcgtgctctgatccatttggcaaaattttactgtgttctag

upper sequence: Vv18s0001g12940.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G139880_T01 (Zea mays), 5'ss of exon 5
GTGCTGCAGAAGAAAGACATTCATATATGGGATGGCAATGCATCCAGAGAGTACCTTGACAGGCAACTACTTGGCTATTGGAATCTgttctattttagaactgctttgtc-ctgcagggtaacttatatatctatatgttgcag
||  ||||  | || |  |||||||| |||||||||||||| || |||||||| |||||| || |  ||   |     |  || ||||   | |  |  | | || |||   ||     |||   |  |    || | ||  ||
GTTTTGCAAGAAAAGGGTATTCATATCTGGGATGGCAATGCTTCAAGAGAGTATCTTGACCGgtatttatcagttggatataagctgta--aataaattatttctctgttattgatatctaatccacctggtcatcttttctag

upper sequence: Vv18s0001g12940.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA11G12280.1 (Glycine max), 5'ss of exon 5
GTGCTGCAGAAGAAAGACATTCATATATGGGATGGCAATGCATCCAGAGAGTACCTTGACAGGCAACTACTTGGCTATTGGAATCTgttcta-ttttagaactgctttgtcctgcagggtaactta-tatatctatatgttgcag----
||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||| ||||||  |      | |   ||| |||  || ||  | |  |  | | | ||     || | | | |  || ||    ||  |     
GTGCTGCAGGAAAAAGGCATTCATATATGGGATGGCAATGCATCCAGAGAgtaccttgataggcaagcatgaccatctactaatttgtattaattgcaaattttttcttttctatgcagttattaactggatttagtatttatatacag

upper sequence: Vv18s0001g12940.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA12G04480.1 (Glycine max), 5'ss of exon 6
GTGCTGCAGAAGAAAGACATTCATATATGGGATGGCAATGCATCCAGAGAGTACCTTGACAGGCAA--CTACTTGGCTATTGGAATCTgttctattttagaactgctttgtcctgcag--ggtaacttatatatctatatgt-tgcag
| ||||||| | |||| |||||||||||||||||||||||||||||| ||||||||||| ||||||   ||     ||| |    | ||   |  |  |    | ||||    |||||    ||||     |  |||| | | | |||
GCGCTGCAGGAAAAAGGCATTCATATATGGGATGGCAATGCATCCAGGGAgtaccttgataggcaagcataaccatctactaatttttgaattgcta-attttttcttttctatgcagttattaaccggagttgctatttatatacag

upper sequence: Vv18s0001g12940.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA06G01280.1 (Glycine max), 5'ss of exon 6
GTGCTGCAGAAGAAAGACATTCATATATGGGATGGCAATGCATCCAGAGAGTACCTTGACAGGCAACTAC--TTGGCTATTGGAATCTgtt-----ctattttagaactg--ctttgtcctgcagg--gtaact---tatatatctatatgttgcag
||||| ||| | |||| ||||||||| ||||||||||||||||||||||| ||||||||  |||||  |    |   ||||  ||  | ||     | ||||    | |   |||| |  |||||   |||| |   | || || | | | ||||||
GTGCTACAGGAAAAAGGCATTCATATTTGGGATGGCAATGCATCCAGAGAATACCTTGATGGgcaagcatgactatatatttcaactttttaagtacaatttgtacatttttctttatattgcagtttgtaattggctttacattttt-tattgcag

upper sequence: Vv18s0001g12940.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA04G01240.1 (Glycine max), 5'ss of exon 6
GTGCTGCAGAAGAAAGACAT---TCATATATGGGATGGCAATGCATC-----CAGAGAGTACCTTGACAGGCAACTA----------CTTGGCTATTGGAATCTgttctattttagaactgctttgtcctgcagggtaacttatatatctatatgttgcag------------------------------------------
||  |  | |  || |  ||     | |  |   || ||| |   ||     ||    ||   ||      ||  ||           ||  || ||    |   || |||| ||  |   |||  | ||| |    ||  |||||    |  || | |||                                          
GTCTTAGAAATAAAGGGTATGGACTAAACTTTCAATCGCAGTATTTCACTTGCATGAGGTGTTTTATTTTTCAGTTATCAAGGAATCTTTTACTGTTATGgtagattttattatatga--acttcattctg-aaaacaaggtatattgacaggtgctacaggaaaaaggcattcatatttgggatggcaatgcatccagagaa