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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttggaacatgctaattctctttatcatttttttcctcattttacggtagtaaaatgcaatgtttcttatttgcgtatttctacattgcagTTTTATGTAGCCAATGGGGAGCTATCCTGTCAAATGTATCAGCGCTCTGCTGATATGGGTCTTGGTGTGCCATTTAACATTGCTTCTTATGCTTTATTGA

Basic information

species Vitis vinifera
transcript Vv18s0001g12940.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g12940.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os11g29390.1 (Oryza sativa), 3'ss of exon 8
--gtttggaacatgctaattctctttatcatttttttc--ctcattttacggtagtaaaatgcaat--gtttcttatttgcg--tatttctacattgcagTTTTATGTAGCCAATGGGGAGCTATCCTGTCAAATGTATCAGCGCTCTGCTGATATGGGTCTTGGTGTGCCATTTAACATTGCTTCTTATGCTTTATTGA
   | |    |   ||     | | ||  |||    |    | || |     || |    || |    |||||||  || |    ||||     || ||||||||||| |  |  ||||||||||| || || |||||||| ||||||||||||||||| |||||||| ||||| |||||||| || ||| || |  |||
ttctctctctctctctctccatgtgtagaattacagtaaaatgatatacaaatattttcttgtagatagtttcttgcttacaataattttcttcttccagTTTTATGTTGAGAGCGGGGAGCTATCGTGCCAGATGTATCAACGCTCTGCTGATATGGGACTTGGTGTTCCATTCAACATTGCATCATATTCTCTTCTGA

upper sequence: Vv18s0001g12940.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os12g26060.1 (Oryza sativa), 3'ss of exon 6
-----------gtttggaacatgctaattctctt--tatcatttttttcctcattttacggtagtaaaatgcaatgtttcttatttgcgtatttctacattgcagTTTTATGTAGCCAATGGGGAGCTATCCTGTCAAATGTATCAGCGCTCTGCTGATATGGGTCTTGGTGTGCCATTTAACATTGCTTCTTATGCTTTATTGA
           ||||   |     | ||| |  |  || ||  | |    |  |  |  |    |   ||  ||  | | | || | |  |  ||  ||     ||||||||| |  ||||||||| | || || || ||||| || ||||||||||||||||| || ||||||||||| |||||||| || ||| || |  |||
gacatctcttagtttttcatgaaatgattttgatgctaccagatgtgcttttctcatttgactatcttatctaacttctgtaatgtactgaaatcccca-----gTTTTATGTTGAGAATGGGGAGTTGTCATGCCAGATGTACCAACGCTCTGCTGATATGGGGCTCGGTGTGCCATTCAACATTGCATCATATTCTCTTCTGA

upper sequence: Vv18s0001g12940.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G139880_T01 (Zea mays), 3'ss of exon 7
gtttggaacatgctaattctctttatcatttttttcctcatttta----cggtagtaaaatg---caatgtttcttatttgcgtatt-tctacattgcagTTTTATGTAGCCAATGGGGAGCTATCCTGTCAAATGTATCAGCGCTCTGCTGATATGGGTCTTGGTGTGCCATTTAACATTGCTTCTTATGCTTTATTGA
|||| |    || |||||  |||| | |  |||     |||||||    || ||  |   |     ||      ||   |||    | |  || || ||||||||||| |  || |||||||||||||| || |||||||| |||||||| || ||||| |||||||| ||||| ||||| || || ||| || | ||||
gttttgcctttgataattacctttgtaacatttgcttgcattttattttcgataacattgtcgactaacaacatttgcatgcaacctattcaccttccagTTTTATGTGGAGAACGGGGAGCTATCCTGCCAGATGTATCAACGCTCTGCAGACATGGGGCTTGGTGTTCCATTCAACATCGCATCATATTCTCTTTTGA

upper sequence: Vv18s0001g12940.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G005990_T01 (Zea mays), 3'ss of exon 8
-------------------------------------------------------------------------------gtttggaacatgctaattct--ctttatcatttttttcctcattttacgg------tagtaaaatgcaatgtttcttatttgcgtatttctacattgcagTTTTATGTAGCCAATGGGGAGCTATCCTGTCAAATGTATCAGCGCTCTGCTGATATGGGTCTTGGTGTGCCATTTAACATTGCTTCTTATGCTTTATTGA
                                                                                 ||    | || ||||| |   |||| ||||  || | |  | ||   |      | || || |  ||   ||   |||      | || || || ||||| ||||| |  |||||||||||||| || || |||||||| |||||||| || ||||| |||||||| ||||| ||||| || || ||| || |  |||
gtcagtataatctgtcagcttggtttaagttgaaattagtttttttttacttttaaattacagtagactggtgaacataagttttttcttgataattatgtttttaacattgcttgcattttatttttgatctttttgtcaactaaaaacatttgcattca-acctatccaccttccagTTCTATGTGGAAAATGGGGAGCTATCTTGCCAGATGTATCAACGCTCTGCAGACATGGGGCTTGGTGTTCCATTCAACATCGCATCATATTCTCTCCTGA

upper sequence: Vv18s0001g12940.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA11G12280.1 (Glycine max), 3'ss of exon 7
gtttggaac-atgct---aattctctttatcatttttttcctcattttacggtagtaaaatgcaatgtttcttatttgcgtatttctacattgcagTTTTATGTAGCCAATGGGGAGCTATCCTGTCAAATGTATCAGCGCTCTGCTGATATGGGTCTTGGTGTGCCATTTAACATTGCTTCTTATGCTTTATTGA
||  | | | ||  |     ||||||||   |    | || |  | |  |  |   |   ||     || ||| | |   | ||| |    ||||||| |||||||| |||||||||||||| ||||||||||||||||| ||||| || ||||| || ||||| |||||||| ||||| ||||||||  |  |||
gtccgcagctatatttgggtttctctttggaagaactctctttttctctca-tgaaattttgttgacttccttttattgttttttttttcctgcagTTCTATGTAGCAAATGGGGAGCTATCATGTCAAATGTATCAGCGATCTGCCGACATGGGCCTGGGTGTCCCATTTAATATTGCATCTTATGCGCTCCTGA

upper sequence: Vv18s0001g12940.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA12G04480.1 (Glycine max), 3'ss of exon 8
gtttggaac-atgct-aattctctttatcatttttttcctcattttacggtagtaaaatgcaatgtttcttatttgcgtatttctacattgcagTTTTATGTAGCCAATGGGGAGCTATCCTGTCAAATGTATCAGCGCTCTGCTGATATGGGTCTTGGTGTGCCATTTAACATTGCTTCTTATGCTTTATTGA
||  | | | ||  |    | ||| | |        ||    |||| |  |  | || |    |     |  |||   | ||| | |  || |||| |||||||| |||||||||||||| ||||||||||||||||| ||||| || ||||| || ||||| |||||||| ||||| ||||||||  |  |||
gtccgcagctatatttgggtttctctttggaagagctctctctttttctctcatgaagttttgtcaacttccttttattgttttttccctgtagTTCTATGTAGCTAATGGGGAGCTATCATGTCAAATGTATCAGCGATCTGCCGACATGGGCCTGGGTGTCCCATTTAATATTGCATCTTATGCACTCCTGA

upper sequence: Vv18s0001g12940.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA06G01280.3 (Glycine max), 3'ss of exon 8
gtttggaacatg-ctaattctctttatcatttttttcctcattttacggtagtaaaatgcaatgtttcttatttgcgtatttctacatt-gcagTTTTATGTAGCCAATGGGGAGCTATCCTGTCAAATGTATCAGCGCTCTGCTGATATGGGTCTTGGTGTGCCATTTAACATTGCTTCTTATGCTTTATTGA
|| || | | |   | |   | ||  |       || | | ||  ||      | | | ||    ||  |||||     |||  || || |||||||||||||||  | |||||| |||| ||||||||||||||||| |||||||||||||| || ||  | |||||||| ||||| ||||||||  | ||||
gtctgcagcttaattcaggtttttctttgaaaaattgccccttccac------atattccacctattgatatttttaatttttaacttttgcagTTTTATGTAGCACACGGGGAGTTATCATGTCAAATGTATCAGCGATCTGCTGATATGGGCCTGGGCATTCCATTTAATATTGCATCTTATGCCCTTTTGA

upper sequence: Vv18s0001g12940.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA04G01240.1 (Glycine max), 3'ss of exon 8
gtttggaacatg-ctaattctctttatcatttttttcctcattttacggtagtaaaatgcaatgtttcttatttgcgtatttctacattgcagTTTTATGTAGCCAATGGGGAGCTATCCTGTCAAATGTATCAGCGCTCTGCTGATATGGGTCTTGGTGTGCCATTTAACATTGCTTCTTATGCTTTATTGA
|| || | | |   | |   | ||  |       || | | ||  ||  |  |   |   | || |  || |     | |||     |||||||||||||||||  | |||||| |||| ||||||||||||||||| |||||||| ||||| || || || |||||||| ||||| ||||||||  | ||||
gtctgcagcttaattcaggtttttctttgaaaaattgccccttccacacttattccacatattgatattttta---atttttaacttttgcagTTTTATGTAGCACACGGGGAGTTATCATGTCAAATGTATCAGCGATCTGCTGACATGGGCCTGGGCGTTCCATTTAATATTGCATCTTATGCCCTTTTGA

upper sequence: Vv18s0001g12940.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT2G16370.1 (Arabidopsis thaliana), 3'ss of exon 8
gtttggaacatgctaattctctttatcatttttttcctcattttacggtagtaaaatgcaatgtttcttatttgcgtatttctacattgcagTTTTATGTAGCCAATGGGGAGCTATCCTGTCAAATGTATCAGCGCTCTGCTGATATGGGTCTTGGTGTGCCATTTAACATTGCTTCTTATGCTTTATTGA
         |||| | ||    || | ||| | ||  |  |  |||   | | |  |  | |  || ||         ||| |   |||||||||||||| ||  | ||||| || || ||||||||||||||||| || || |||||||| ||||||||||| |||||||||||||||||  || |  | |
------gtaatgccactttatcttctaattctgttgtttctcctac---aatgagtttgattacttttt---------ttttttttttgcagTTTTATGTGGCAGAAGGGGAACTCTCATGTCAAATGTATCAGCGTTCAGCAGATATGGGCCTTGGTGTGCCGTTTAACATTGCTTCTTACTCTCTTCTTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcattttacggtagtaaaatgcaatgtttcttatttgcgtatttctacattgcagTTTTATGTAGCCAATGGGGAGCTATCCTGTCAAATGTATCAGCGCTCTGCTGATATGGGTCTTGGTGTGCCATTTAACATTGCTTCTTATGCTTTATTGA
                                       tatttct  CT-rich tract
                      aatgtttcttattt  TA-rich tract