Sequence
atgc intronic sequence ATGC exonic sequencegttagtttgctgtacatttagtataatttttgttccatcattcaatcatcctccttagagttctgtttaacagGTATACCAACATGCATGCTGACTACATGGGTAAAGGATTTGATCAGTTGCTTGATGTTATTGATAAGATCAAGAATAAACCTGATGACAGGCGTATTATA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g12940.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: LOC_Os11g29390.1 (Oryza sativa), 3'ss of exon 7
gttagtttg-ctgtacatttagtataatttttgttccatcattcaatcatcctccttagagttctg--------------------tttaacagGTATACCAACATGCATGCTGACTACATGGGTAAAGGATTTGATCAGTTGCTTGATGTTATTGATAAGATCAAGAATAAACCTGATGACAGGCGTATTATA
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gtaagtttttctctcgcccctacatacctatcgatgtaccaatctatctgtccatctaggtctctaaggactaaggactaactatttgtaacagATATACCGACATGCATGCTGACTATACTGGTAAAGGCTTTGATCAGCTAATGGATGTGATTGACAAGATCAAGAATAATCCTGACGATAGGCGAATTATC
upper sequence: Vv18s0001g12940.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: LOC_Os12g26060.1 (Oryza sativa), 3'ss of exon 5
-----------------------------gttagtttgctgtacatttagtataatttttgttccatcattcaatcatcctccttagagttctgtttaacagGTATACCAACATGCATGCTGACTACATGGGTAAAGGATTTGATCAGTTGCTTGATGTTATTGATAAGATCAAGAATAAACCTGATGACAGGCGTATTATA
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actttgaaactttcctctctctctctctctctctctctctccatatttcct-taactttatctatctgactagattctaatttcc-gtgaaatattttgtagATATACTGACATGCATGCTGACTACGTGGGAAAAGGTTTTGATCAGTTAATGGATGTCATTGACAAGATCAAGAATAATCCCGATGATAGAAGAATCATT
upper sequence: Vv18s0001g12940.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM2G005990_T01 (Zea mays), 3'ss of exon 7
---------gttagtttgctgtacatttagtataatttttgttccatcattcaatcatcctcct-tagagt---tctgtttaacagGTATACCAACATGCATGCTGACTACATGGGTAAAGGATTTGATCAGTTGCTTGATGTTATTGATAAGATCAAGAATAAACCTGATGACAGGCGTATTATA
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gtaagctacattcctctcctct-cttctcgtgttgtctcttttcttttgttcatgtattttttgataaagtagacatatttgacagATACACTGACATGCATGCTGACTATACGGGAAAAGGTTTTGATCAGCTAATGGATGTGATTGACAAGATCAAGAATGATCCTGACGACCGTCGAATAATT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tagtataatttttgttccatcattcaatcatcctccttagagttctgtttaacagGTATACCAACATGCATGCTGACTACATGGGTAAAGGATTTGATCAGTTGCTTGATGTTATTGATAAGATCAAGAATAAACCTGATGACAGGCGTATTATA
ttctgttt CT-rich tract
taatttttgtt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttagtttgctgtacatttagtataatttttgttccatcattcaatcatcctccttagagttctgtttaacagGTATACCAACATGCATGCTGACTACATGGGTAAAGGATTTGATCAGTTGCTTGATGTTATTGATAAGATCAAGAATAAACCTGATGACAGGCGTATTATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA