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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGTGGAAGCATGCCGTCAGCTTTGAAATTACTGGCAGAATCTCCTTATTGTTTGTCAATAGACAAGGTGTTTGTTATAGGGGGTGGTCAGATATTAAGgtgagtaatttattgctctttgaatgaagtggaaactgttttgttaattataatgatattggtgatcttatatacag

Basic information

species Vitis vinifera
transcript Vv18s0001g12940.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g12940.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA06G01280.1 (Glycine max), 5'ss of exon 2
TATGTGGAAGCATGCCGTCAGCTTTGAAATTACTGGCAGAATCTCCTTATTGTTTGTCAATAGACAAGGTGTTTGTTATAGGGGGTGGTCAGATATTAAGgtgagtaatttattgc----tctttgaatgaagtggaaactgttt-tgttaa----ttataatgatattggtga----tcttatatacag
|||||||||||||| | || || ||| || |  | || |  |||||||| | | ||||||| || || || |||||||||||||||||||||||||| ||||   | |||  ||      | ||   ||    |     || ||  ||||||    ||    || ||| | |||    | | |  |||||
TATGTGGAAGCATGTCTTCTGCATTGGAACTGTTAGCTGCTTCTCCTTACTCTCTGTCAATTGAGAAAGTTTTTGTTATAGGGGGTGGTCAGATATTTAGgtacatcattctttaaaatattttctcatatgctccttccttttcatgttaagctctttctttgttatagctgataattttcacgtacag

upper sequence: Vv18s0001g12940.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA04G01240.1 (Glycine max), 5'ss of exon 1
TATGTGGAAGCATGCCGTCAGCTTTGAAATTACTGGCAGAATCTCCTTATTGTTTGTCAATAGACAAGGTGTTTGTTATAGGGGGTGGTCAGATATTAAGgtgagtaatt--------tattgctctttgaatgaagtggaaactgttt-tgttaa----ttataatgatattggtgat----cttatatacag
|||||||||||||| |||| || ||| || |  | || |  |||||||| | | ||||||| || || || ||||||||||| |||||||||||||| ||||   |  ||        ||||    | |  ||    |     || ||  ||||||    ||    || ||| | ||||     | || |||||
TATGTGGAAGCATGTCGTCTGCATTGGAACTGTTAGCTGCTTCTCCTTACTCTCTGTCAATTGAGAAAGTATTTGTTATAGGAGGTGGTCAGATATTTAGgtacatctttctttaaaatattttgttcttcatccgctccttccttttcatgttaagctctttctttgttatagctgataattttcatgtacag