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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCCTGACCGAGGCACTCTGTGGATTTCAATTTATACTGACTCATTTGGATGGTAGACAGCTTCTCATTAAATCCCATCCAGGAGAAGTGGTCAAGCCTGgtaagtttcagtggtatttaagctttctgcatgacatggaaattctcttctgaagtttagatatgccatctattcataaatgtggttttggttgcatttt...

Basic information

species Vitis vinifera
transcript Vv13s0073g00560.t01
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349813486|gb|FQ413720.1|FQ413720
EST:     TGGTAGACAGCTTCTCATTAAATCCCATCCAGGAGAAGTGGTCAAGCCTG                         ACCAATTCAAGGCTATAAATGATGAAGGAATGCCCATTTACCAGAAGCCAT
genomic: TGGTAGACAGCTTCTCATTAAATCCCATCCAGGAGAAGTGGTCAAGCCTGgtaagtttca ... ttccatacagACCAATTCAAGGCTATAAATGATGAAGGAATGCCCATTTACCAGAAGCCAT
EST: gi|37183923|gb|CF603277.1|CF603277
EST:     TGGTAGACAGCTTCTCATTAAATCCCATCCAGGAGAAGTGGTCAAGCCTG                         ACCAATTCAAGGCTATAAATGATGAAGGAATGCCCATTTACCAGAAGCCAT
genomic: TGGTAGACAGCTTCTCATTAAATCCCATCCAGGAGAAGTGGTCAAGCCTGgtaagtttca ... ttccatacagACCAATTCAAGGCTATAAATGATGAAGGAATGCCCATTTACCAGAAGCCAT
EST: gi|294965649|gb|GW837248.1|GW837248
EST:     TGGTAGACAGCTTCTCATTAAATCCCATCCAGGAGAAGTGGTCAAGCCTG                         ACCAATTCAAGGCTATAAATGACGAAGGAATGCCCATTTACCAGAAGCCAT
genomic: TGGTAGACAGCTTCTCATTAAATCCCATCCAGGAGAAGTGGTCAAGCCTGgtaagtttca ... ttccatacagACCAATTCAAGGCTATAAATGATGAAGGAATGCCCATTTACCAGAAGCCAT
EST: gi|349809834|gb|FQ398459.1|FQ398459
EST:     TGGTAGACAGCTTCTCATTAAATCCCATCCAGGAGAAGTGGTCAAGCCTG                         ACCAATTCAAGGCTATAAATGATGAAGGAATGCCCATTTACCAGAAGCCAT
genomic: TGGTAGACAGCTTCTCATTAAATCCCATCCAGGAGAAGTGGTCAAGCCTGgtaagtttca ... ttccatacagACCAATTCAAGGCTATAAATGATGAAGGAATGCCCATTTACCAGAAGCCAT
EST: gi|351045590|gb|FQ440775.1|FQ440775
EST:     TGGTAGACAGCTTCTCATTAAATCCCATCCAGGAGAAGTGGTCAAGCCTG                         ACCAATTCAAGGCTATAAATGATGAAGGAATGCCCATTTACCAGAAGCCAT
genomic: TGGTAGACAGCTTCTCATTAAATCCCATCCAGGAGAAGTGGTCAAGCCTGgtaagtttca ... ttccatacagACCAATTCAAGGCTATAAATGATGAAGGAATGCCCATTTACCAGAAGCCAT
EST: gi|110701517|gb|EE079177.1|EE079177
EST:     TGGTAGACAGCTTCTCATTAAATCCCATCCAGGAGAAGTTGTCAAGCCTG                         ACCAATTCAAGGCTATAAATGATGAAGGAATGCCCATTTACCAGAAGCCAT
genomic: TGGTAGACAGCTTCTCATTAAATCCCATCCAGGAGAAGTGGTCAAGCCTGgtaagtttca ... ttccatacagACCAATTCAAGGCTATAAATGATGAAGGAATGCCCATTTACCAGAAGCCAT
EST: gi|110700386|gb|EE078366.1|EE078366
EST:     TGGTAGACAGCTTCTCATTAAATCCCATCCAGGAGAAGTGGTCAAGCCTG                         ACCAATTCAAGGCTATAAATGACGAAGGAATGCCCATTTACCAGAAGCCAT
genomic: TGGTAGACAGCTTCTCATTAAATCCCATCCAGGAGAAGTGGTCAAGCCTGgtaagtttca ... ttccatacagACCAATTCAAGGCTATAAATGATGAAGGAATGCCCATTTACCAGAAGCCAT
EST: gi|110719344|gb|EE097209.1|EE097209
EST:     TGGTAGACAGCTTCTCATTAAATCCCATCCAGGAGAAGTGGTCAAGCCTG                         ACCAATTCAAGGCTATAAATGACGAAGGAATGCCCATTTACCAGAAGCCAT
genomic: TGGTAGACAGCTTCTCATTAAATCCCATCCAGGAGAAGTGGTCAAGCCTGgtaagtttca ... ttccatacagACCAATTCAAGGCTATAAATGATGAAGGAATGCCCATTTACCAGAAGCCAT
EST: gi|30251770|gb|CB969503.1|CB969503
EST:     TGGTAGACAGCTTCTCATTAAATCCCATCCAGGAGAAGTGGTCAAGCCTG                         ACCAATTCAAGGCTATAAATGACGAAGGAATGCCCATTTACCAGAAGCCAT
genomic: TGGTAGACAGCTTCTCATTAAATCCCATCCAGGAGAAGTGGTCAAGCCTGgtaagtttca ... ttccatacagACCAATTCAAGGCTATAAATGATGAAGGAATGCCCATTTACCAGAAGCCAT
EST: gi|37183637|gb|CF602991.1|CF602991
EST:     TGGTAGACAGCTTCTCATTAAATCCCATCCAGGAGAAGTGGTCAAGCCTG                         ACCAATTCAAGGCTATAAATGACGAAGGAATGCCCATTTACCAGAAGCCAT
genomic: TGGTAGACAGCTTCTCATTAAATCCCATCCAGGAGAAGTGGTCAAGCCTGgtaagtttca ... ttccatacagACCAATTCAAGGCTATAAATGATGAAGGAATGCCCATTTACCAGAAGCCAT
EST: gi|30299616|gb|CB976410.1|CB976410
EST:     TGGTAGACAGCTTCTCATTAAATCCCATCCAGGAGAAGTGGTCAAGCCTG                         ACCAATTCAAGGCTATAAATGACGAAGGAATGCCCATTTACCAGAAGCCAT
genomic: TGGTAGACAGCTTCTCATTAAATCCCATCCAGGAGAAGTGGTCAAGCCTGgtaagtttca ... ttccatacagACCAATTCAAGGCTATAAATGATGAAGGAATGCCCATTTACCAGAAGCCAT
EST: gi|161721403|gb|FC071069.1|FC071069
EST:     TGGTAGACAGCTTCTCATTAAATCCCATCCAGGAGAAGTGGTCAAGCCTG                         ACCAATTCAAGGCTATAAATGATGAAGGAATGCCCATTTACCAGAAGCCAT
genomic: TGGTAGACAGCTTCTCATTAAATCCCATCCAGGAGAAGTGGTCAAGCCTGgtaagtttca ... ttccatacagACCAATTCAAGGCTATAAATGATGAAGGAATGCCCATTTACCAGAAGCCAT
EST: gi|110709172|gb|EE084401.1|EE084401
EST:     TGGTAGACAGCTTCTCATTAAATCCCATCCAGGAGAAGTTGTCAAGCCTG                         ACCAATTCAAGGCTATAAATGATGAAGGAATGCCCATTTACCAGAAGCCAT
genomic: TGGTAGACAGCTTCTCATTAAATCCCATCCAGGAGAAGTGGTCAAGCCTGgtaagtttca ... ttccatacagACCAATTCAAGGCTATAAATGATGAAGGAATGCCCATTTACCAGAAGCCAT
EST: gi|351034499|gb|FQ448175.1|FQ448175
EST:     TGGTAGACAGCTTCTCATTAAATCCCATCCAGGAGAAGTAGTCAAGCCTG                         ACCAATTCAAGGCTATAAATGATGAAGGAATGCCCATTTACCAGAAGCCAT
genomic: TGGTAGACAGCTTCTCATTAAATCCCATCCAGGAGAAGTGGTCAAGCCTGgtaagtttca ... ttccatacagACCAATTCAAGGCTATAAATGATGAAGGAATGCCCATTTACCAGAAGCCAT
EST: gi|351049477|gb|FQ450078.1|FQ450078
EST:     TGGTAGACAGCTTCTCATTAAATCCCATCCAGGAGAAGTGGTCAAGCCTG                         ACCAATTCAAGGCTATAAATGATGAAGGAATGCCCATTTACCAGAAGCCAT
genomic: TGGTAGACAGCTTCTCATTAAATCCCATCCAGGAGAAGTGGTCAAGCCTGgtaagtttca ... ttccatacagACCAATTCAAGGCTATAAATGATGAAGGAATGCCCATTTACCAGAAGCCAT
EST: gi|110690410|gb|EE067495.1|EE067495
EST:     TGGTAGACAGCTTCTCATTAAATCCCATCCAGGAGAAGTGGTCAAGCCTG                         ACCAATTCAAGGCTATAAATGACGAAGGAATGCCCATTTACCAGAAGCCAT
genomic: TGGTAGACAGCTTCTCATTAAATCCCATCCAGGAGAAGTGGTCAAGCCTGgtaagtttca ... ttccatacagACCAATTCAAGGCTATAAATGATGAAGGAATGCCCATTTACCAGAAGCCAT
EST: gi|351033230|gb|FQ462002.1|FQ462002
EST:     TGGTAGACAGCTTCTCATTAAATCCCATCCAGGAGAAGTGGTCAAGCCTG                         ACCAATTCAAGGCTATAAATGATGAAGGAATGCCCATTTACCAGAAGCCAT
genomic: TGGTAGACAGCTTCTCATTAAATCCCATCCAGGAGAAGTGGTCAAGCCTGgtaagtttca ... ttccatacagACCAATTCAAGGCTATAAATGATGAAGGAATGCCCATTTACCAGAAGCCAT
EST: gi|110689078|gb|EE064987.1|EE064987
EST:     TGGTAGACAGCTTCTCATTAAATCCCATCCAGGAGAAGTGGTCAAGCCTG                         ACCAATTCAAGGCTATAAATGACGAAGGAATGCCCATTTACCAGAAGCCAT
genomic: TGGTAGACAGCTTCTCATTAAATCCCATCCAGGAGAAGTGGTCAAGCCTGgtaagtttca ... ttccatacagACCAATTCAAGGCTATAAATGATGAAGGAATGCCCATTTACCAGAAGCCAT
EST: gi|351056828|gb|FQ443455.1|FQ443455
EST:     TGGTAGACAGCTTCTCATTAAATCCCATCCAGGAGAAGTAGTCAAGCCTG                         ACCAATTCAAGGCTATAAATGATGAAGGAATGCCCATTTACCAGAAGCCAT
genomic: TGGTAGACAGCTTCTCATTAAATCCCATCCAGGAGAAGTGGTCAAGCCTGgtaagtttca ... ttccatacagACCAATTCAAGGCTATAAATGATGAAGGAATGCCCATTTACCAGAAGCCAT
EST: gi|30300798|gb|CB977592.1|CB977592
EST:     TGGTAGACAGCTTCTCATTAAATCCCATCCAGGAGAAGTGGTCAAGCCTG                         ACCAATTCAAGGCTATAAATGATGAAGGAATGCCCATTTACCAGAAGCCAT
genomic: TGGTAGACAGCTTCTCATTAAATCCCATCCAGGAGAAGTGGTCAAGCCTGgtaagtttca ... ttccatacagACCAATTCAAGGCTATAAATGATGAAGGAATGCCCATTTACCAGAAGCCAT
EST: gi|351044496|gb|FQ443027.1|FQ443027
EST:     TGGTAGACAGCTTCTCATTAAATCCCATCCAGGAGAAGTGGTCAAGCCTG                         ACCAATTCAAGGCTATAAATGATGAAGGAATGCCCATTTACCAGAAGCCAT
genomic: TGGTAGACAGCTTCTCATTAAATCCCATCCAGGAGAAGTGGTCAAGCCTGgtaagtttca ... ttccatacagACCAATTCAAGGCTATAAATGATGAAGGAATGCCCATTTACCAGAAGCCAT
EST: gi|110379577|gb|EC944783.1|EC944783
EST:     TGGTAGACAGCTTCTCATTAAATCCCATCCAGGAGAAGTGGTCAAGCCTG                         ACCAATTCAAGGCTATAAATGACGAAGGAATGCCCATTTACCAGAAGCCAT
genomic: TGGTAGACAGCTTCTCATTAAATCCCATCCAGGAGAAGTGGTCAAGCCTGgtaagtttca ... ttccatacagACCAATTCAAGGCTATAAATGATGAAGGAATGCCCATTTACCAGAAGCCAT
EST: gi|33402992|gb|CF208619.1|CF208619
EST:     TGGTAGACAGCTTCTCATTAAATCCCATCCAGGAGAAGTGGTCAAGCCTG                         ACCAATTCAAGGCTATAAATGACGAAGGAATGCCCATTTACCAGAAGCCAT
genomic: TGGTAGACAGCTTCTCATTAAATCCCATCCAGGAGAAGTGGTCAAGCCTGgtaagtttca ... ttccatacagACCAATTCAAGGCTATAAATGATGAAGGAATGCCCATTTACCAGAAGCCAT
EST: gi|110412269|gb|EC978012.1|EC978012
EST:     TGGTAGACAGCTTCTCATTAAATCCCATCCAGGAGAAGTGGTCAAGCCTG                         ACCAATTCAAGGCTATAAATGATGAAGGAATGCCCATTTACCAGAAGCCAT
genomic: TGGTAGACAGCTTCTCATTAAATCCCATCCAGGAGAAGTGGTCAAGCCTGgtaagtttca ... ttccatacagACCAATTCAAGGCTATAAATGATGAAGGAATGCCCATTTACCAGAAGCCAT
EST: gi|110394251|gb|EC958916.1|EC958916
EST:     TGGTAGACAGCTTCTCATTAAATCCCATCCAGGAGAAGTGGTCAAGCCTG                         ACCAATTCAAGGCTATAAATGATGAAGGAATGCCCATTTACCAGAAGCCAT
genomic: TGGTAGACAGCTTCTCATTAAATCCCATCCAGGAGAAGTGGTCAAGCCTGgtaagtttca ... ttccatacagACCAATTCAAGGCTATAAATGATGAAGGAATGCCCATTTACCAGAAGCCAT
EST: gi|46917908|gb|CN547237.1|CN547237
EST:     TGGTAGACAGCTTCTCATTAAATCCCATCCAGGAGAAGTGGTCAAGCCTG                         ACCAATTCAAGGCTATAAATGACGAAGGAATGCCCATTTACCAGAAGCCAT
genomic: TGGTAGACAGCTTCTCATTAAATCCCATCCAGGAGAAGTGGTCAAGCCTGgtaagtttca ... ttccatacagACCAATTCAAGGCTATAAATGATGAAGGAATGCCCATTTACCAGAAGCCAT
EST: gi|33408361|gb|CF213988.1|CF213988
EST:     TGGTAGACAGCTTCTCATTAAATCCCATCCAGGAGAAGTGGTCAAGCCTG                         ACCAATTCAAGGCTATAAATGATGAAGGAATGCCCACTTACCAGAAGCCAT
genomic: TGGTAGACAGCTTCTCATTAAATCCCATCCAGGAGAAGTGGTCAAGCCTGgtaagtttca ... ttccatacagACCAATTCAAGGCTATAAATGATGAAGGAATGCCCATTTACCAGAAGCCAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCCCTGACCGAGGCACTCTGTGGATTTCAATTTATACTGACTCATTTGGATGGTAGACAGCTTCTCATTAAATCCCATCCAGGAGAAGTGGTCAAGCCTGgtaagtttcagtggtatttaagctttctgcatgacatggaaattctcttctgaagtttagatatgccatctattcataaatgtggttttggttgcatttt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atggaaa