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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagagacttgagtctttgttcattttgaaatcaaagcttgagctaccggcatgagtgaacattgttaactgttggatgaaattttatgtgctcagGTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGACGTCATCCACCCCCTTAAGGTTTCTCTGGAAGATCTCTACAATGGGACATCCAAGAA

Basic information

species Vitis vinifera
transcript Vv13s0073g00560.t01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110693853|gb|EE070447.1|EE070447
EST:     TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTG                         GTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGATGTCATCC
genomic: TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTGgtaagagact ... atgtgctcagGTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGACGTCATCC
EST: gi|110688559|gb|EE067247.1|EE067247
EST:     TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTG                         GTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGATGTCATCC
genomic: TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTGgtaagagact ... atgtgctcagGTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGACGTCATCC
EST: gi|110724863|gb|EE101065.1|EE101065
EST:     TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTG                         GTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGATGTCATCC
genomic: TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTGgtaagagact ... atgtgctcagGTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGACGTCATCC
EST: gi|161716047|gb|FC069120.1|FC069120
EST:     TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTG                         GTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGATGTCATCC
genomic: TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTGgtaagagact ... atgtgctcagGTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGACGTCATCC
EST: gi|294965649|gb|GW837248.1|GW837248
EST:     TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCTTTTGGTG                         GTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGACGTCATCC
genomic: TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTGgtaagagact ... atgtgctcagGTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGACGTCATCC
EST: gi|110687574|gb|EE065142.1|EE065142
EST:     TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTG                         GTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGATGTCATCC
genomic: TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTGgtaagagact ... atgtgctcagGTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGACGTCATCC
EST: gi|161720070|gb|FC066726.1|FC066726
EST:     TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTG                         GTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGATGTCATCC
genomic: TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTGgtaagagact ... atgtgctcagGTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGACGTCATCC
EST: gi|161721403|gb|FC071069.1|FC071069
EST:     TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTG                         GTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGATGATGTCATCC
genomic: TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTGgtaagagact ... atgtgctcagGTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGACGTCATCC
EST: gi|110687103|gb|EE064221.1|EE064221
EST:     TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTG                         GTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGATGTCATCC
genomic: TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTGgtaagagact ... atgtgctcagGTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGACGTCATCC
EST: gi|110727911|gb|EE105214.1|EE105214
EST:     TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGCTG                         GTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGATGTCATCC
genomic: TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTGgtaagagact ... atgtgctcagGTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGACGTCATCC
EST: gi|26257505|gb|CA808568.1|CA808568
EST:     TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTG                         GTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGATGTCATCC
genomic: TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTGgtaagagact ... atgtgctcagGTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGACGTCATCC
EST: gi|161718145|gb|FC068894.1|FC068894
EST:     TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTG                         GTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGATGTCATCC
genomic: TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTGgtaagagact ... atgtgctcagGTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGACGTCATCC
EST: gi|10283309|gb|BE846432.1|BE846432
EST:     TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTG                         GTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGATGTCATCC
genomic: TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTGgtaagagact ... atgtgctcagGTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGACGTCATCC
EST: gi|161721807|gb|FC070158.1|FC070158
EST:     TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTG                         GTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGATGTCATCC
genomic: TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTGgtaagagact ... atgtgctcagGTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGACGTCATCC
EST: gi|110367088|gb|EC931010.1|EC931010
EST:     TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTG                         GTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGATGTCATCC
genomic: TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTGgtaagagact ... atgtgctcagGTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGACGTCATCC
EST: gi|37183602|gb|CF602956.1|CF602956
EST:     TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTG                         GTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAANNNNNNNAGGATGTCATC
genomic: TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTGgtaagagact ... atgtgctcagGTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGG-AGGACGTCATC
EST: gi|161709203|gb|FC057966.1|FC057966
EST:     TGACCCCTTTGAC-TATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTG                         GTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGATGTCATCC
genomic: TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTGgtaagagact ... atgtgctcagGTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGACGTCATCC
EST: gi|110380006|gb|EC945241.1|EC945241
EST:     TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTG                         GTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGATGTCATCC
genomic: TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTGgtaagagact ... atgtgctcagGTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGACGTCATCC
EST: gi|110687757|gb|EE065533.1|EE065533
EST:     TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTG                         GTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGATGTCATCC
genomic: TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTGgtaagagact ... atgtgctcagGTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGACGTCATCC
EST: gi|110689394|gb|EE065590.1|EE065590
EST:     TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTG                         GTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGATGTCATCC
genomic: TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTGgtaagagact ... atgtgctcagGTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGACGTCATCC
EST: gi|161719134|gb|FC069349.1|FC069349
EST:     TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTG                         GTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGATGTCATCC
genomic: TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTGgtaagagact ... atgtgctcagGTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGACGTCATCC
EST: gi|110700663|gb|EE077516.1|EE077516
EST:     TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTG                         GTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGATGTCATCC
genomic: TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTGgtaagagact ... atgtgctcagGTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGACGTCATCC
EST: gi|110732660|gb|EE108151.1|EE108151
EST:     TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTG                         GTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGATGTCATCC
genomic: TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTGgtaagagact ... atgtgctcagGTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGACGTCATCC
EST: gi|161716635|gb|FC069142.1|FC069142
EST:     TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTG                         GTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGATGTCATCC
genomic: TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTGgtaagagact ... atgtgctcagGTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGACGTCATCC
EST: gi|161716378|gb|FC064903.1|FC064903
EST:     TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTG                         GTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGATGTCATCC
genomic: TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTGgtaagagact ... atgtgctcagGTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGACGTCATCC
EST: gi|37189828|gb|CF609177.1|CF609177
EST:     TGGCAACCCATTTGGTG                         GTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGACGTCATCC
genomic: TGGCAACCCATTTGGTGgtaagagact ... atgtgctcagGTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGACGTCATCC
EST: gi|33402992|gb|CF208619.1|CF208619
EST:     TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTG                         GTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGATGTCATCC
genomic: TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTGgtaagagact ... atgtgctcagGTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGACGTCATCC
EST: gi|110356751|gb|EC919805.1|EC919805
EST:     TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTG                         GTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAANNNNNNNAGGATGTCATC
genomic: TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTGgtaagagact ... atgtgctcagGTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGG-AGGACGTCATC
EST: gi|161717969|gb|FC069264.1|FC069264
EST:     TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTG                         GTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGATGTCATCC
genomic: TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTGgtaagagact ... atgtgctcagGTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGACGTCATCC
EST: gi|110708416|gb|EE085929.1|EE085929
EST:     TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGCTG                         GTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGATGTCATCC
genomic: TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTGgtaagagact ... atgtgctcagGTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGACGTCATCC
EST: gi|110721365|gb|EE098283.1|EE098283
EST:     TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGCTG                         GTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAA
genomic: TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTGgtaagagact ... atgtgctcagGTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAA
EST: gi|110687093|gb|EE064204.1|EE064204
EST:     TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTG                         GTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGATGTCATCC
genomic: TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTGgtaagagact ... atgtgctcagGTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGACGTCATCC
EST: gi|71863330|gb|DT012385.1|DT012385
EST:     TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTG                         GTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGATGTCATCC
genomic: TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTGgtaagagact ... atgtgctcagGTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGACGTCATCC
EST: gi|110703858|gb|EE081072.1|EE081072
EST:     TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGCTG                         GTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGATGTCATCC
genomic: TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTGgtaagagact ... atgtgctcagGTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGACGTCATCC
EST: gi|161720402|gb|FC069851.1|FC069851
EST:     TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTG                         GTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGATGTCATCC
genomic: TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTGgtaagagact ... atgtgctcagGTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGACGTCATCC
EST: gi|161719216|gb|FC065444.1|FC065444
EST:     TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTG                         GTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGATGTCATCC
genomic: TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTGgtaagagact ... atgtgctcagGTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGACGTCATCC
EST: gi|161720382|gb|FC070180.1|FC070180
EST:     TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTG                         GTGGTGGAAGCAGCAGATGTCGGAGGCAAAGAAGGGGGGAGGATGTCATCC
genomic: TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTGgtaagagact ... atgtgctcagGTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGACGTCATCC
EST: gi|33408361|gb|CF213988.1|CF213988
EST:     GACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTG                         GTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGATGTCATCC
genomic: GACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTGgtaagagact ... atgtgctcagGTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGACGTCATCC
EST: gi|110370683|gb|EC932670.1|EC932670
EST:     TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTG                         GTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGATGTCATCC
genomic: TGACCCCTTTGACATATTCCAATCCTTCTTTGGTGGCAACCCATTTGGTGgtaagagact ... atgtgctcagGTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGACGTCATCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agctaccggcatgagtgaacattgttaactgttggatgaaattttatgtgctcagGTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGACGTCATCCACCCCCTTAAGGTTTCTCTGGAAGATCTCTACAATGGGACATCCAAGAA
                      tgttaac  putative branch site (score: 2)
                                   atgaaattttatgt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagagacttgagtctttgttcattttgaaatcaaagcttgagctaccggcatgagtgaacattgttaactgttggatgaaattttatgtgctcagGTGGTGGAAGCAGCAGAGGCCGGAGGCAAAGAAGGGGGGAGGACGTCATCCACCCCCTTAAGGTTTCTCTGGAAGATCTCTACAATGGGACATCCAAGAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA