Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGAAGGTTGTACAAGAGAAGAAAGTGTTGGAAGTCATTGTAGAGAAGGGGATGCAAAATGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCGgtgagtcaaagtgtctaattctatatttgttatcaatctgtttcttcattgataaacaaagcatcttgcatactttttggtgtctataaacatattcctcatgtgttgttattgatttgtgagtatgctttgagctccttgcag

Basic information

species Vitis vinifera
transcript Vv13s0073g00560.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0073g00560.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os03g57340.1 (Oryza sativa), 5'ss of exon 4
TGAGAAGGTTGTACAAGAGAAGAAAGTGTTGGAAGTCATTGTAGAGAAGGGGATGCAAAATGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCGgtgagtcaaagtgtctaattctatatttgttatcaatctgtttcttcattgataaacaaagcat-cttgcatactttttggtgtctataaacatattcctcatgtgttgttattgatttgtgagtatgctttgagctccttgcag
||||||||| |  || |||||||| ||  | || ||  | || |||||||| ||||| |||||||||| ||| || |||||||| || ||||||||||||||  |||   ||    | | ||    ||||     |  || ||||    ||    ||      | ||||   ||  | |  |    |  ||| | | | |  ||                                         
TGAGAAGGTGGCGCAGGAGAAGAAGGTTCTTGAGGTGGTGGTCGAGAAGGGCATGCAGAATGGACAGAAGATCACCTTCCCTGGTGAGGCTGATGAAGCGgtatgtctgtgttctgactcctcgcattgtacagtacatggttctaaggtgtagtactccatgtgcttgtcaacactgt--tactgaccaacctgtgctttgtgcag--------------------------------------

upper sequence: Vv13s0073g00560.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G134917_T01 (Zea mays), 5'ss of exon 4
TGAGAAGGTTGTACAAGAGAAGAAAGTGTTGGAAGTCATTGTAGAGAAGGGGATGCAAAATGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCGgtgagtcaaagtgtctaattctatatttgttatcaatctgtttcttcattgataaacaaagcatcttgcatactttttggtgtctataaacatattcctcatgtgttgttattgatttgtgagtatgctttgagctccttgcag
||| || ||||| || |||||||| ||  | |||||  |||| ||||| || ||||| ||||| |||| ||| ||||||||||| |||||||||||||||||  |   || ||  |   ||  |     |  ||||| || ||| |  ||  |   | |    |     |||    ||||   |||   || ||    ||  ||| |  | |  |                             
TGATAAAGTTGTGCAGGAGAAGAAGGTTCTTGAAGTGTTTGTGGAGAAAGGCATGCAGAATGGGCAGAAGATCACATTCCCTGGTGAAGCTGATGAAGCGgtatg---aactgattctgtccttgccaatcgtcaatttggttccttgttattg--ctatatgtgccaaatagaccttgggtccta---acctagctatctggtgattgtgtgcag----------------------------

upper sequence: Vv13s0073g00560.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G028218_T01 (Zea mays), 5'ss of exon 4
TGAGAAGGTTGTACAAGAGAAGAAAGTGTTGGAAGTCATTGTAGAGAAGGGGATGCAAAATGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCGgtgagtcaaagtgtctaattctatatttgttatcaatctgtttcttcattgataaacaaagcatcttgcatactttttggtgtctataaacata--ttcctcatgtgttgttattgatttgtgagtatgctttgagctccttgcag
||| || ||||| |  |||||||||||  | |||||  | || ||||| || ||||| ||||| |||| ||| ||||||||||| ||||||||||||||||| |     | |   || | ||      ||| | ||  | || ||      | |||| || | |||    | ||   |  ||| |  || | |   |||    | ||||||  | | | ||                         
TGATAAAGTTGTGCCGGAGAAGAAAGTTCTTGAAGTGGTAGTTGAGAAAGGTATGCAGAATGGGCAGAAGATCACATTCCCTGGCGAAGCTGATGAAGCGgtaat---gactccttagtcct----cagttctaaagttattcctctggc-acaaactaaacttct---gttctaactaatgtgtgcaaccttgggttctaactatgttgtgctcg-tgtgcag----------------------

upper sequence: Vv13s0073g00560.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G434839_T01 (Zea mays), 5'ss of exon 11
TGAGAAGGTTGTACAAGAGAAGAAAGTGTTGGAAGTCATTGTAGAGAAGGGGATGCAAAATGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCGgtgagtcaaagtgtctaattctatatttgttatcaatctgtttcttcattgataaacaaagcatcttgcatactttttggtgtctataaacatattcctcatgtgttgttattgatttgtgagtatgctttgagctccttgcag
||| || || ||    ||||||||||| || |||||  | || ||||| || ||||| || ||||| | ||| ||||||||||| ||||||||||||||||| |     | |   || | ||      ||| | ||  | || ||      | |||| || | |||    | ||   |  ||| |  ||          | || ||| | | |   |||||   |||    |            
TGATAAAGTCGTGTCGGAGAAGAAAGTTTTTGAAGTGGTAGTTGAGAAAGGTATGCAGAACGGACATAAGATCACATTCCCTGGCGAAGCTGATGAAGCGgtaat---gactccttagtcct----cagttctaaagttattcctctggc-acaaactaaacttct---gttctaactaatgtgtgcaa---------ccttgggttctaactatcttgtgctcatgtgcag------------

upper sequence: Vv13s0073g00560.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G029079_T01 (Zea mays), 5'ss of exon 6
TGAGAAGGTTGTACAAGAGAAGAAAGTGTTGGAAGTCATTGTAGAGAAGGGGATGCAAAATGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCGgtgagtcaaagtgtctaattctatatttgttatcaatctgtttcttcattgataaacaaagcatcttgcatactttttggtgtctataaacatattcctcatgtgttgttattgatttgtgagtatgctttgagctccttgcag
||| || |||||    |||||||||||  | |||||  | || ||||| || ||||| || || |||| ||| ||||||||||| ||||||||||||||||| |     | |   || | ||      ||| | ||  | || ||      | |||| || | |||    | ||   |  ||| |  ||          | || ||| | | |   ||||                        
TGATAAAGTTGTGTCGGAGAAGAAAGTTCTTGAAGTGGTAGTTGAGAAAGGTATGCAGAACGGGCAGAAGATCACATTCCCTGGCGAAGCTGATGAAGCGgtaat---gactccttagtcct----cagttctaaagttattcctctggc-acaaactaaacttct---gttctaactaatgtgtgcaa---------ccttgggttctaactatcttgt------------------------

upper sequence: Vv13s0073g00560.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G433854_T01 (Zea mays), 5'ss of exon 3
TGAGAAGGTTGTACAAGAGAAGAAAGTGTTGGAAGTCATTGTAGAGAAGGGGATGCAAAATGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCGgtgagtcaaagtgtctaattctatatttgttatcaatctgtttcttcattgataaacaaagcatcttgcatactttttggtgtctataaacatattcctcatgtgttgttattgatttgtgagtatgctttgagctccttgcag
||| || ||||| |  |||||||||||  | |||||  | || ||||| || ||||| || || |||| ||| ||||||||||| ||||||||||||||||| |     | |   || | ||  |||| | |   |  | || ||      | |||| || | |||    | ||   |  ||| |  ||          | || ||| | | |   |||||  | ||    |            
TGATAAAGTTGTGCCGGAGAAGAAAGTTCTTGAAGTGGTAGTTGAGAAAGGTATGCAGAACGGGCAGAAGATCACATTCCCTGGCGAAGCTGATGAAGCGgtaat---gactccttagtcct-catttctaa---agttattcctctggc-acaaactaaacttct---gttctaactaatgtgtgcaa---------ccttgggttctaactatcttgtgcttgtgtgcag------------

upper sequence: Vv13s0073g00560.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G004276_T02 (Zea mays), 5'ss of exon 7
TGAGAAGGTTGTACAAGAGAAGAAAGTGTTGGAAGTCATTGTAGAGAAGGGGATGCAAAATGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCGgtgagtcaaagtgtctaattctatatttgttatcaatctgtttcttcattgataaacaaagcatcttgcatactttttggtgtctataaacatattcctcatgtgttgttattgatttgtgagtatgctttgagctccttgcag
||  || ||||| | ||||||||||||  | |||||  | ||  |||| || ||||| || || |||| ||| ||||||||||| ||||||||||||||||| |     | |   || | ||      ||| | ||  | || |||     | |||| || | |||    | ||   |  ||| |  ||          | || ||| | | |   ||||                        
TGTTAAAGTTGTGCCAGAGAAGAAAGTTCTTGAAGTGGTAGTTCAGAAAGGTATGCAGAACGGGCAGAAGATCACATTCCCTGGCGAAGCTGATGAAGCGgtaat---gactccttagtcct----ccgttctaaagttattcctttggc-acaaactaaacttct---gttctaactaatgtgtgcaa---------ccttgggttctaactaccttgt------------------------

upper sequence: Vv13s0073g00560.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G063238_T01 (Zea mays), 5'ss of exon 7
---------------------------------------------------------------TGAGAAGGTTGTACAAGAGAAGAAAGTGTTGGAAGTCATTGTAGAGAAGGGGATGCAAAATGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCGgtgagtcaaagtgtctaattctatatttgttatcaatctgtttcttcattgataaacaaagcatcttgcatactttttggtgtctataaacatattcctcatgtgttgttattgatttgtgagtatgctttgagctccttgcag
                                                               ||  || ||||| | ||||||||||||  | |||||  | ||  |||| || ||||| || || |||| ||| ||||||||||| ||||||||||||||||| |     | |   || | ||      ||| | ||  | || ||      | |||| || | |||    | ||   |  ||| |  ||          | || ||| | | |   |||||    ||    |            
CAATGAGTGCAAGGGTTCTGGAGAGACCATCAGCGATAAGGATAGATGCCCACAATGCAAAGGTGTTAAAGTTGTGCCAGAGAAGAAAGTTCTTGAAGTGgtagtttagaaaggtatgcagaacgggcagaagatcacattccctggcgaagctgatgaagcggtaat---gactccttagtcct----ccgttctaaagttattcctctggc-acaaactaaacttct---gttctaactaatgtgtgcaa---------ccttgggttctaactaccttgtgctcgtgtgcag------------

upper sequence: Vv13s0073g00560.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G056988_T04 (Zea mays), 5'ss of exon 1
TGAGAAGGTTGTACAAGAGAAGAAAGTGTTGGAAGTCATTGTAGAGAAGGGGATGCAAAATGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCGgtgagtcaaagtgtctaattctatatttgttatcaatctgtttcttcattgataaacaaagcatcttgcatactttttggtgtctataaacatattcctcatgtgttgttattgatttgtgagtatgctttgagctccttgcag
||  || ||||| | ||||||||||||  | |||||  | ||  |||| || ||||| || || |||| ||| ||||||||||| ||||||||||||||||| |     | |   || | ||      ||| | ||  | || |||     | |||| || | |||    | ||   |  ||| |  ||          | || ||| | | |   |||||    ||    |            
TGTTAAAGTTGTGCCAGAGAAGAAAGTTCTTGAAGTGGTAGTTCAGAAAGGTATGCAGAACGGGCAGAAGATCACATTCCCTGGCGAAGCTGATGAAGCGgtaat---gactccttagtcct----ccgttctaaagttattcctttggc-acaaactaaacttct---gttctaactaatgtgtgcaa---------ccttgggttctaactaccttgtgctcgtgtgcag------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349813486|gb|FQ413720.1|FQ413720
EST:     GGATGCAAAATGGGCAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCG                         CCTGACACAGTCACAGGCGACATAGTTTTCGTCCTACAACAGAAAGAGCAT
genomic: GGATGCAAAATGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCGgtgagtcaaa ... ctccttgcagCCTGACACAGTCACAGGCGACATAGTTTTCGTCCTACAACAGAAAGAGCAT
EST: gi|110688559|gb|EE067247.1|EE067247
EST:     GGATGCAAAATGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCG                         CCTGACACAGTCACAGGCGACATAGTTTTCGTCCTACAACAGAAAGAGCAT
genomic: GGATGCAAAATGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCGgtgagtcaaa ... ctccttgcagCCTGACACAGTCACAGGCGACATAGTTTTCGTCCTACAACAGAAAGAGCAT
EST: gi|110724863|gb|EE101065.1|EE101065
EST:     GGATGCAAAATGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCG                         CCTGACACAGTCACAGGCGACATAGTTTTCGTCCTACAACAGAAAGAGCAT
genomic: GGATGCAAAATGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCGgtgagtcaaa ... ctccttgcagCCTGACACAGTCACAGGCGACATAGTTTTCGTCCTACAACAGAAAGAGCAT
EST: gi|37183923|gb|CF603277.1|CF603277
EST:     ATAACATTCCCTGGAGAAGCTGATGAAGCG                         CCTGACACAGTCACAGGCGACATAGTTTTCGTCCTACAACAGAAAGAGCAT
genomic: ATAACATTCCCTGGAGAAGCTGATGAAGCGgtgagtcaaa ... ctccttgcagCCTGACACAGTCACAGGCGACATAGTTTTCGTCCTACAACAGAAAGAGCAT
EST: gi|294965649|gb|GW837248.1|GW837248
EST:     GGATGCAAAATGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCG                         CCTGACACAGTCACAGGCGACATAGTTTTCGTCCTACAACAGAAAGAGCAT
genomic: GGATGCAAAATGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCGgtgagtcaaa ... ctccttgcagCCTGACACAGTCACAGGCGACATAGTTTTCGTCCTACAACAGAAAGAGCAT
EST: gi|349809834|gb|FQ398459.1|FQ398459
EST:     GGATGCAAAATGGGCAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCG                         CCTGACACAGTCACAGGCGACATAGTTTTCGTCCTACAACAGAAAGAGCAT
genomic: GGATGCAAAATGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCGgtgagtcaaa ... ctccttgcagCCTGACACAGTCACAGGCGACATAGTTTTCGTCCTACAACAGAAAGAGCAT
EST: gi|351045590|gb|FQ440775.1|FQ440775
EST:     GGATGCAAAATGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCG                         CCTGACACAGTCACAGGCGACATAGTTTTCGTCCTACAACAGAAAGAGCAT
genomic: GGATGCAAAATGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCGgtgagtcaaa ... ctccttgcagCCTGACACAGTCACAGGCGACATAGTTTTCGTCCTACAACAGAAAGAGCAT
EST: gi|161710629|gb|FC058560.1|FC058560
EST:     GGATGCAAAATGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCG                         CCTGACACAGTCACAGGCGACATAGTTTTCGTCCTACAACAGAAAGAGCAT
genomic: GGATGCAAAATGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCGgtgagtcaaa ... ctccttgcagCCTGACACAGTCACAGGCGACATAGTTTTCGTCCTACAACAGAAAGAGCAT
EST: gi|110701517|gb|EE079177.1|EE079177
EST:     GGATGCAAAATGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCG                         CCTGACACAGTCACAGGCGACATAGTTTTCGTCCTACAACAGAAAGAGCAT
genomic: GGATGCAAAATGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCGgtgagtcaaa ... ctccttgcagCCTGACACAGTCACAGGCGACATAGTTTTCGTCCTACAACAGAAAGAGCAT
EST: gi|110700386|gb|EE078366.1|EE078366
EST:     GGATGCAAAATGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCG                         CCTGACACAGTCACAGGCGACATAGTTTTCGTCCTACAACAGAAAGAGCAT
genomic: GGATGCAAAATGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCGgtgagtcaaa ... ctccttgcagCCTGACACAGTCACAGGCGACATAGTTTTCGTCCTACAACAGAAAGAGCAT
EST: gi|110719344|gb|EE097209.1|EE097209
EST:     GGATGCAAAATGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCG                         CCTGACACAGTCACAGGCGACATAGTTTTCGTCCTACAACAGAAAGAGCAT
genomic: GGATGCAAAATGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCGgtgagtcaaa ... ctccttgcagCCTGACACAGTCACAGGCGACATAGTTTTCGTCCTACAACAGAAAGAGCAT
EST: gi|30251770|gb|CB969503.1|CB969503
EST:     GGATGCAAAATGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCG                         CCTGACACAGTCACAGGCGACATAGTTTTCGTCCTACAACAGAAAGAGCAT
genomic: GGATGCAAAATGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCGgtgagtcaaa ... ctccttgcagCCTGACACAGTCACAGGCGACATAGTTTTCGTCCTACAACAGAAAGAGCAT
EST: gi|37183637|gb|CF602991.1|CF602991
EST:     GGATGCAAAATGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCG                         CCTGACACAGTCACAGGCGACATAGTTTTCGTCCTACAACAGAAAGAGCAT
genomic: GGATGCAAAATGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCGgtgagtcaaa ... ctccttgcagCCTGACACAGTCACAGGCGACATAGTTTTCGTCCTACAACAGAAAGAGCAT
EST: gi|30299616|gb|CB976410.1|CB976410
EST:     GGATGCAAAATGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCA                         CCTGACACAGTCACAGGCGACATAGTTTTCGTCCTACAACAGAAAGAGCAT
genomic: GGATGCAAAATGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCGgtgagtcaaa ... ctccttgcagCCTGACACAGTCACAGGCGACATAGTTTTCGTCCTACAACAGAAAGAGCAT
EST: gi|161721403|gb|FC071069.1|FC071069
EST:     GGATGCAAAATGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCG                         CCTGACACAGTCACAGGCGACATAGTTTTCGTCCTACAACAGAAAGAGCAT
genomic: GGATGCAAAATGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCGgtgagtcaaa ... ctccttgcagCCTGACACAGTCACAGGCGACATAGTTTTCGTCCTACAACAGAAAGAGCAT
EST: gi|110709172|gb|EE084401.1|EE084401
EST:     GGATGCAAAATGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCG                         CCTGACACAGTCACAGGCGACATAGTTTTCGTCCTACAACAGAAAGAGCAT
genomic: GGATGCAAAATGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCGgtgagtcaaa ... ctccttgcagCCTGACACAGTCACAGGCGACATAGTTTTCGTCCTACAACAGAAAGAGCAT
EST: gi|110687103|gb|EE064221.1|EE064221
EST:     GGATGCAAAATGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCG                         CCTGACACAGTCACAGGCGACATAGTTTTCGTCCTACAACAGAAAGAGCAT
genomic: GGATGCAAAATGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCGgtgagtcaaa ... ctccttgcagCCTGACACAGTCACAGGCGACATAGTTTTCGTCCTACAACAGAAAGAGCAT
EST: gi|351034499|gb|FQ448175.1|FQ448175
EST:     GGATGCAAAATGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCG                         CCTGACACAGTCACAGGCGACATAGTTTTCGTCCTACAACAGAAAGAGCAT
genomic: GGATGCAAAATGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCGgtgagtcaaa ... ctccttgcagCCTGACACAGTCACAGGCGACATAGTTTTCGTCCTACAACAGAAAGAGCAT
EST: gi|351049477|gb|FQ450078.1|FQ450078
EST:     GGATGCAAAATGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCG                         CCTGACACAGTCACAGGCGACATAGTTTTCGTCCTACAACAGAAAGAGCAT
genomic: GGATGCAAAATGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCGgtgagtcaaa ... ctccttgcagCCTGACACAGTCACAGGCGACATAGTTTTCGTCCTACAACAGAAAGAGCAT
EST: gi|110690410|gb|EE067495.1|EE067495
EST:     GGATGCAAAATGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCG                         CCTGACACAGTCACAGGCGACATAGTTTTCGTCCTACAACAGAAAGAGCAT
genomic: GGATGCAAAATGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCGgtgagtcaaa ... ctccttgcagCCTGACACAGTCACAGGCGACATAGTTTTCGTCCTACAACAGAAAGAGCAT
EST: gi|351033230|gb|FQ462002.1|FQ462002
EST:     GGATGCAAAACGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCG                         CCTGACACAGTCACAGGCGACATAGTTTTCGTCATACAACAGAAAGAGCAT
genomic: GGATGCAAAATGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCGgtgagtcaaa ... ctccttgcagCCTGACACAGTCACAGGCGACATAGTTTTCGTCCTACAACAGAAAGAGCAT
EST: gi|110367088|gb|EC931010.1|EC931010
EST:     GGATGCAAAATGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCG                         CCTGACACAGTCACAGGCGACATAGTTTTCGTCCTACAACAGAAAGAGCAT
genomic: GGATGCAAAATGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCGgtgagtcaaa ... ctccttgcagCCTGACACAGTCACAGGCGACATAGTTTTCGTCCTACAACAGAAAGAGCAT
EST: gi|110689078|gb|EE064987.1|EE064987
EST:     GGATGCAAAATGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCG                         CCTGACACAGTCACAGGCGACATAGTTTTCGTCCTACAACAGAAAGAGCAT
genomic: GGATGCAAAATGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCGgtgagtcaaa ... ctccttgcagCCTGACACAGTCACAGGCGACATAGTTTTCGTCCTACAACAGAAAGAGCAT
EST: gi|351056828|gb|FQ443455.1|FQ443455
EST:     GGATGCAAAATGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCG                         CCTGACACAGTCACAGGCGACGTAGTTTTCGTCCTACAACAGAAAGAGCAT
genomic: GGATGCAAAATGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCGgtgagtcaaa ... ctccttgcagCCTGACACAGTCACAGGCGACATAGTTTTCGTCCTACAACAGAAAGAGCAT
EST: gi|351044496|gb|FQ443027.1|FQ443027
EST:     GGATGCAAAATGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCG                         CCTGACACAGTCACAGGCGACATAGTTTTCGTCCTACAACAGAAAGAGCAT
genomic: GGATGCAAAATGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCGgtgagtcaaa ... ctccttgcagCCTGACACAGTCACAGGCGACATAGTTTTCGTCCTACAACAGAAAGAGCAT
EST: gi|110379577|gb|EC944783.1|EC944783
EST:     GGATGCAAAATGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCG                         CCTGACACAGTCACAGGCGACATAGTTTTCGTCCTACAACAGAAAGAGCAT
genomic: GGATGCAAAATGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCGgtgagtcaaa ... ctccttgcagCCTGACACAGTCACAGGCGACATAGTTTTCGTCCTACAACAGAAAGAGCAT
EST: gi|37189828|gb|CF609177.1|CF609177
EST:     GGATGCAAAATGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCG                         CCTGACACAGTCACAGGTGACATAGTTTTCGTCCTACAACAGAAAGAGCAT
genomic: GGATGCAAAATGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCGgtgagtcaaa ... ctccttgcagCCTGACACAGTCACAGGCGACATAGTTTTCGTCCTACAACAGAAAGAGCAT
EST: gi|33402992|gb|CF208619.1|CF208619
EST:     GGATGCAAAATGGACTGAGGATAACATTCCCTGGAGAAGCTGATGAAGCG                         CCTGACACAGTCACAGGCGACATAGTTTTCGTCCTACAACAGAAAGAGCAT
genomic: GGATGCAAAATGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCGgtgagtcaaa ... ctccttgcagCCTGACACAGTCACAGGCGACATAGTTTTCGTCCTACAACAGAAAGAGCAT
EST: gi|110394251|gb|EC958916.1|EC958916
EST:     GGATGCAAAATGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCG                         CCTGACACAGTCACAGGCGACATAGTTTTCGTCCTACAACAGAAAGAGCAT
genomic: GGATGCAAAATGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCGgtgagtcaaa ... ctccttgcagCCTGACACAGTCACAGGCGACATAGTTTTCGTCCTACAACAGAAAGAGCAT
EST: gi|110687093|gb|EE064204.1|EE064204
EST:     GGATGCAAAATGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCG                         CCTGACACAGTCACAGGCGACATAGTTTTCGTCCTACA-CAGAAAGAGCAT
genomic: GGATGCAAAATGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCGgtgagtcaaa ... ctccttgcagCCTGACACAGTCACAGGCGACATAGTTTTCGTCCTACAACAGAAAGAGCAT
EST: gi|46917908|gb|CN547237.1|CN547237
EST:     GGATGCAAAATGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCG                         CCTGACACAGTCACAGGCGACATAGTTTTCGTCCTACAACAGAAAGAGCAT
genomic: GGATGCAAAATGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCGgtgagtcaaa ... ctccttgcagCCTGACACAGTCACAGGCGACATAGTTTTCGTCCTACAACAGAAAGAGCAT
EST: gi|33408361|gb|CF213988.1|CF213988
EST:     GGATGCAAAATGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCG                         CCTGACACAGTCACAGGCGACATAGTTTTCGTCCTACAACAGAAAGAGCAT
genomic: GGATGCAAAATGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCGgtgagtcaaa ... ctccttgcagCCTGACACAGTCACAGGCGACATAGTTTTCGTCCTACAACAGAAAGAGCAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGAGAAGGTTGTACAAGAGAAGAAAGTGTTGGAAGTCATTGTAGAGAAGGGGATGCAAAATGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCGgtgagtcaaagtgtctaattctatatttgttatcaatctgtttcttcattgataaacaaagcatcttgcatactttttggtgtctataaacatattcctcatgtgttgttattgatttgtgagtatgctttgagctccttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC