Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgttttgtatctaattttccctagaattctgttaatttcctgtttgcttgttcagaaattgctggatttttttaaaaatatatttatgtggcggttttgattgttgattttatttgcagAGGGGTAGATTTTTCGGTGGGGTTGCTTGGAATCAGATAAAATGTTTGGTAGGGCTCCCAAGAAAAGCGATAACACTAAGTACTATGATGTTCTTGGAGT

Basic information

species Vitis vinifera
transcript Vv13s0073g00560.t01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110693853|gb|EE070447.1|EE070447
EST:     CTCTGCAATTCCTATCTCCCTACTCAATCTAGGTTTTCTTTTCAGGATCG                         AGGGGTAGATTTTTCGGTGGGGTTGCTTGGAATCAGATAAAATGTTTGGTA
genomic: CTCTGCAATTCCTATCTCCCTACTCAATCTAGGTTTTCTTTTCAGGATCGgttcgttttg ... ttatttgcagAGGGGTAGATTTTTCGGTGGGGTTGCTTGGAATCAGATAAAATGTTTGGTA
EST: gi|161707492|gb|FC055997.1|FC055997
EST:     CTCTGCAATTCCTATCTCCCTACTCAATCTAGGTTTTCTTTTCAGGATCG                         AGGGGTAGATTTTTCGGTGGGGTTGCTTGGAATCAGATAAAATGTTTGGTA
genomic: CTCTGCAATTCCTATCTCCCTACTCAATCTAGGTTTTCTTTTCAGGATCGgttcgttttg ... ttatttgcagAGGGGTAGATTTTTCGGTGGGGTTGCTTGGAATCAGATAAAATGTTTGGTA
EST: gi|161716047|gb|FC069120.1|FC069120
EST:     TCAATCTAGGTTTTCTTTTCAGGATCG                         AGGGGTAGATTTTTCGGTGGGGTTGCTTGGAATCAGATAAAATGTTTGGTA
genomic: TCAATCTAGGTTTTCTTTTCAGGATCGgttcgttttg ... ttatttgcagAGGGGTAGATTTTTCGGTGGGGTTGCTTGGAATCAGATAAAATGTTTGGTA
EST: gi|37190398|gb|CF609747.1|CF609747
EST:     CTCTGCAATTCCTATATCCCTACTCAATCTAGGTTTTCTTTTCAGGATCG                         AGGGGTAGATTTTTCGGTGGGGTTGCTTGGAATCAGATAAAATGTTTGGTA
genomic: CTCTGCAATTCCTATCTCCCTACTCAATCTAGGTTTTCTTTTCAGGATCGgttcgttttg ... ttatttgcagAGGGGTAGATTTTTCGGTGGGGTTGCTTGGAATCAGATAAAATGTTTGGTA
EST: gi|110687574|gb|EE065142.1|EE065142
EST:     CTCTGCAATTCCTATCTCCCTACTCAATCTAGGTTTTCTTTTCAGGATCG                         AGGGGTAGATTTTTCGGTGGGGTTGCTTGGAATCAGATAAAATGTTTGGTA
genomic: CTCTGCAATTCCTATCTCCCTACTCAATCTAGGTTTTCTTTTCAGGATCGgttcgttttg ... ttatttgcagAGGGGTAGATTTTTCGGTGGGGTTGCTTGGAATCAGATAAAATGTTTGGTA
EST: gi|161720070|gb|FC066726.1|FC066726
EST:     CTCTGCAATTCCTATCTACCTACTCAATCTAGGTTATCTTTTCAGGATCG                         AGGGGTAGATTTTTCGGTGGGGTTGCTTGGAATCAGATAAAATGTTTGGTA
genomic: CTCTGCAATTCCTATCTCCCTACTCAATCTAGGTTTTCTTTTCAGGATCGgttcgttttg ... ttatttgcagAGGGGTAGATTTTTCGGTGGGGTTGCTTGGAATCAGATAAAATGTTTGGTA
EST: gi|161708407|gb|FC056542.1|FC056542
EST:     CTCTGCAATTCCTATCTCCCTACTCAATCTAGGTTTTCTTTTCAGGTTCG                         AGGGGTAGATTTTTCGGTGGGGTTGCTTGGAATCAGATAAAATGTTTGGTA
genomic: CTCTGCAATTCCTATCTCCCTACTCAATCTAGGTTTTCTTTTCAGGATCGgttcgttttg ... ttatttgcagAGGGGTAGATTTTTCGGTGGGGTTGCTTGGAATCAGATAAAATGTTTGGTA
EST: gi|77584583|gb|DV221373.1|DV221373
EST:     CTCTGCAATTCCTATCTACCTACTCAATCTAGGTTATCTTTTCAGGATCG                         AGGGGTAGATTTTTCGGTGGGGTTGCTTGGAATCAGATAAAATGTTTGGTA
genomic: CTCTGCAATTCCTATCTCCCTACTCAATCTAGGTTTTCTTTTCAGGATCGgttcgttttg ... ttatttgcagAGGGGTAGATTTTTCGGTGGGGTTGCTTGGAATCAGATAAAATGTTTGGTA
EST: gi|110727911|gb|EE105214.1|EE105214
EST:     CTCTGCAATTCCTATCTCCCTACTCAATCTAGGTTTTCTTTTCAGGATCG                         AGGGGTAGATTTTTCGGTGGGGTTGCTTGGAATCAGATAAAATGTTTGGTA
genomic: CTCTGCAATTCCTATCTCCCTACTCAATCTAGGTTTTCTTTTCAGGATCGgttcgttttg ... ttatttgcagAGGGGTAGATTTTTCGGTGGGGTTGCTTGGAATCAGATAAAATGTTTGGTA
EST: gi|161710472|gb|FC058522.1|FC058522
EST:     CTCTGCAATTCCTATCTACCTACTCAATCTAGGTTATCTTTTCAGGATCG                         AGGGGTAGATTTTTCGGTGGGGTTGCTTGGAATCAGATAAAAGGTTTGGTA
genomic: CTCTGCAATTCCTATCTCCCTACTCAATCTAGGTTTTCTTTTCAGGATCGgttcgttttg ... ttatttgcagAGGGGTAGATTTTTCGGTGGGGTTGCTTGGAATCAGATAAAATGTTTGGTA
EST: gi|26257505|gb|CA808568.1|CA808568
EST:     CTCTGCAATTCCTATCTACCTACTCAATCTAGGTTATCTTTTCAGGATCG                         AGGGGTAGATTTTTCGGTGGGGTTGCTTGGAATCAGATAAAATGTTTGGTA
genomic: CTCTGCAATTCCTATCTCCCTACTCAATCTAGGTTTTCTTTTCAGGATCGgttcgttttg ... ttatttgcagAGGGGTAGATTTTTCGGTGGGGTTGCTTGGAATCAGATAAAATGTTTGGTA
EST: gi|161718145|gb|FC068894.1|FC068894
EST:     CTCTGCAATTCCTATCTACCTACTCAATCTAGGTTATCTTTTCAGGATCG                         AGGGGTAGATTTTTCGGTGGGGTTGCTTGGAATCAGATAAAATGTTTGGTA
genomic: CTCTGCAATTCCTATCTCCCTACTCAATCTAGGTTTTCTTTTCAGGATCGgttcgttttg ... ttatttgcagAGGGGTAGATTTTTCGGTGGGGTTGCTTGGAATCAGATAAAATGTTTGGTA
EST: gi|161721807|gb|FC070158.1|FC070158
EST:     CTCTGCAATTCCTATCTCCCTACTCAATCTAGGTTTTCTTTTCAGGATCG                         AGGGGTAGATTTTTCGGTGGGGTTGCTTGGAATCAGATAAAATGTTTGGTA
genomic: CTCTGCAATTCCTATCTCCCTACTCAATCTAGGTTTTCTTTTCAGGATCGgttcgttttg ... ttatttgcagAGGGGTAGATTTTTCGGTGGGGTTGCTTGGAATCAGATAAAATGTTTGGTA
EST: gi|37183602|gb|CF602956.1|CF602956
EST:     CTCTGCAATTCCTATCTCCCTACTCAATCTAGGTTTTCTTTTCAGGATCG                         AGGGGTAGATTTTTCGGTGGGGTTGCTTGGAATCAGATAAAATGTTTGGTA
genomic: CTCTGCAATTCCTATCTCCCTACTCAATCTAGGTTTTCTTTTCAGGATCGgttcgttttg ... ttatttgcagAGGGGTAGATTTTTCGGTGGGGTTGCTTGGAATCAGATAAAATGTTTGGTA
EST: gi|110380006|gb|EC945241.1|EC945241
EST:     CTCTGCAATTCCTATCTACCTACTCAATCTAGGTTATCTTTTCAGGATCG                         AGGGGTAGATTTTTCGGTGGGGTTGCTTGGAATCAGATAAAATGTTTGGTA
genomic: CTCTGCAATTCCTATCTCCCTACTCAATCTAGGTTTTCTTTTCAGGATCGgttcgttttg ... ttatttgcagAGGGGTAGATTTTTCGGTGGGGTTGCTTGGAATCAGATAAAATGTTTGGTA
EST: gi|110687757|gb|EE065533.1|EE065533
EST:     CTCTGCAATTCCTATCTCCCTACTCAATCTAGGTTTTCTTTTCAGGATCG                         AGGGGTAGATTTTTCGGTGGGGTTGCTTGGAATCAGATAAAATGTTTGGTA
genomic: CTCTGCAATTCCTATCTCCCTACTCAATCTAGGTTTTCTTTTCAGGATCGgttcgttttg ... ttatttgcagAGGGGTAGATTTTTCGGTGGGGTTGCTTGGAATCAGATAAAATGTTTGGTA
EST: gi|110689394|gb|EE065590.1|EE065590
EST:     CTCTGCAATTCCTATCTCCCTACTCAATCTAGGTTTTCTTTTCAGGATCG                         AGGGGTAGATTTTTCGGTGGGGTTGCTTGGAATCAGATAAAATGTTTGGTA
genomic: CTCTGCAATTCCTATCTCCCTACTCAATCTAGGTTTTCTTTTCAGGATCGgttcgttttg ... ttatttgcagAGGGGTAGATTTTTCGGTGGGGTTGCTTGGAATCAGATAAAATGTTTGGTA
EST: gi|110700663|gb|EE077516.1|EE077516
EST:     CTCTGCAATTCCTATCTCCCTACTCAATCTAGGTTTTCTTTTCAGGATCG                         AGGGGTAGATTTTTCGGTGGGGTTGCTTGGAATCAGATAAAATGTTTGGTA
genomic: CTCTGCAATTCCTATCTCCCTACTCAATCTAGGTTTTCTTTTCAGGATCGgttcgttttg ... ttatttgcagAGGGGTAGATTTTTCGGTGGGGTTGCTTGGAATCAGATAAAATGTTTGGTA
EST: gi|71858214|gb|DT007269.1|DT007269
EST:     CTCTGCAATTCCTATCTACCTACTCAATCTAGGTTATCTTTTCAGGATCG                         AGGGGTAGATTTTTCGGTGGGGTTGCTTGGAATCAGATAAAATGTTTGGTA
genomic: CTCTGCAATTCCTATCTCCCTACTCAATCTAGGTTTTCTTTTCAGGATCGgttcgttttg ... ttatttgcagAGGGGTAGATTTTTCGGTGGGGTTGCTTGGAATCAGATAAAATGTTTGGTA
EST: gi|110732660|gb|EE108151.1|EE108151
EST:     CTCTGCAATTCCTATCTCCCTACTCAATCTAGGTTTTCTTTTCAAGATCG                         AGGGGTAGATTTTTCGGTGGGGTTGCTTGGAATCAGATAAAATGTTTGGTA
genomic: CTCTGCAATTCCTATCTCCCTACTCAATCTAGGTTTTCTTTTCAGGATCGgttcgttttg ... ttatttgcagAGGGGTAGATTTTTCGGTGGGGTTGCTTGGAATCAGATAAAATGTTTGGTA
EST: gi|161716378|gb|FC064903.1|FC064903
EST:     CTCTGCAATTCCTATCTACCTACTCAATCTAGGTTATCTTTTCAGGATCG                         AGGGGTAGATTTTTCGGTGGGGTTGCTTGGAATCAGATAAAATGTTTGGTA
genomic: CTCTGCAATTCCTATCTCCCTACTCAATCTAGGTTTTCTTTTCAGGATCGgttcgttttg ... ttatttgcagAGGGGTAGATTTTTCGGTGGGGTTGCTTGGAATCAGATAAAATGTTTGGTA
EST: gi|161717969|gb|FC069264.1|FC069264
EST:     CTCTGCAATTCCTATCTCCCTACTCAATCTAGGTTTTCTTTTCAGGATCG                         AGGGGTAGATTTTTCGGTGGGGTTGCTTGGAATCAGATAAAATGTTTGGTA
genomic: CTCTGCAATTCCTATCTCCCTACTCAATCTAGGTTTTCTTTTCAGGATCGgttcgttttg ... ttatttgcagAGGGGTAGATTTTTCGGTGGGGTTGCTTGGAATCAGATAAAATGTTTGGTA
EST: gi|110708416|gb|EE085929.1|EE085929
EST:     CTCTGCAATTCCTATCTCCCTACTCAATCTAGGTTTTCTTTTCAGGATCG                         AGGGGTAGATTTTTCGGTGGGGTTGCTTGGAATCAGATAAAATGTTTGGTA
genomic: CTCTGCAATTCCTATCTCCCTACTCAATCTAGGTTTTCTTTTCAGGATCGgttcgttttg ... ttatttgcagAGGGGTAGATTTTTCGGTGGGGTTGCTTGGAATCAGATAAAATGTTTGGTA
EST: gi|110721365|gb|EE098283.1|EE098283
EST:     CTCTGCAATTCCTATCTCCCTACTCAATCTAGGTTTTCTTTTCAGGATCG                         AGGGGTAGATTTTTCGGTGGGGTTGCTTGGAATCAGATAAAATGTTTGGTA
genomic: CTCTGCAATTCCTATCTCCCTACTCAATCTAGGTTTTCTTTTCAGGATCGgttcgttttg ... ttatttgcagAGGGGTAGATTTTTCGGTGGGGTTGCTTGGAATCAGATAAAATGTTTGGTA
EST: gi|161708390|gb|FC057854.1|FC057854
EST:     CTCTGCAATTCCTATCTACCTACTCAATCTAGGTTATCTTTTCAGGATCG                         AGGGGTAGATTTTTCGGTGGGGTTGCTTGGAATCAGATAAAATGTTTGGTA
genomic: CTCTGCAATTCCTATCTCCCTACTCAATCTAGGTTTTCTTTTCAGGATCGgttcgttttg ... ttatttgcagAGGGGTAGATTTTTCGGTGGGGTTGCTTGGAATCAGATAAAATGTTTGGTA
EST: gi|71863330|gb|DT012385.1|DT012385
EST:     CTCTGCAATTCCTATCTCCCTACTCAATCTAGATTTTCTTTTCAGGATCG                         AGGGGTAGATTTTTCGGTGGGGTTGCTTGGAATCAGATAAAATGTTTGGTA
genomic: CTCTGCAATTCCTATCTCCCTACTCAATCTAGGTTTTCTTTTCAGGATCGgttcgttttg ... ttatttgcagAGGGGTAGATTTTTCGGTGGGGTTGCTTGGAATCAGATAAAATGTTTGGTA
EST: gi|110703858|gb|EE081072.1|EE081072
EST:     CTTTTCAAGATCG                         AGGGGTAGATTTTTCGGTGGGGTTGCTTGGAATCAGATAAAATGTTTGGTA
genomic: CTTTTCAGGATCGgttcgttttg ... ttatttgcagAGGGGTAGATTTTTCGGTGGGGTTGCTTGGAATCAGATAAAATGTTTGGTA
EST: gi|161708681|gb|FC059210.1|FC059210
EST:     CTCTGCAATTCCTATCTACCTACTCAATCTAGGTTATCTTTTCAGGATCG                         AGGGGTAGATTTTTCGGTGGGGTTGCTTGGAATCAGATAAAATGTTTGGTA
genomic: CTCTGCAATTCCTATCTCCCTACTCAATCTAGGTTTTCTTTTCAGGATCGgttcgttttg ... ttatttgcagAGGGGTAGATTTTTCGGTGGGGTTGCTTGGAATCAGATAAAATGTTTGGTA
EST: gi|161719216|gb|FC065444.1|FC065444
EST:     CTCTGCAATTCCTATCTCCCTACTCAATCTAGGTTTTCTTTTCAGGATCG                         AGGGGTAGATTTTTCGGTGGGGTTGCTTGGAATCAGATAAAATGTTTGGTA
genomic: CTCTGCAATTCCTATCTCCCTACTCAATCTAGGTTTTCTTTTCAGGATCGgttcgttttg ... ttatttgcagAGGGGTAGATTTTTCGGTGGGGTTGCTTGGAATCAGATAAAATGTTTGGTA
EST: gi|161720382|gb|FC070180.1|FC070180
EST:     CTCTGCAATTCCTATCTCCCTACTCAATCTAGGTTTTCTTTTCAGGATCG                         AGGGGTAGATTTTTCGGTGGGGTTGCTTGGAATCAGATAAAATGTTTGGTA
genomic: CTCTGCAATTCCTATCTCCCTACTCAATCTAGGTTTTCTTTTCAGGATCGgttcgttttg ... ttatttgcagAGGGGTAGATTTTTCGGTGGGGTTGCTTGGAATCAGATAAAATGTTTGGTA
EST: gi|161708787|gb|FC057923.1|FC057923
EST:     CTCTGCAATTCCTATCTCCCTACTCAATCTAGGTTTTCTTTTCAGGATCG                         AGGGGTAGATTTTTCGGTGGGGTTGCTTGGAATCAGATAAAATGTTTGGTA
genomic: CTCTGCAATTCCTATCTCCCTACTCAATCTAGGTTTTCTTTTCAGGATCGgttcgttttg ... ttatttgcagAGGGGTAGATTTTTCGGTGGGGTTGCTTGGAATCAGATAAAATGTTTGGTA
EST: gi|110370683|gb|EC932670.1|EC932670
EST:     CTCTGCAATTCCTATCTCCCTACTCAATCTAGGTTTTCTTTTCAGGATCG                         AGGGGTAGATTTTTCGGTGGGGTTGCTTGGAATCAGATAAAATGTTTGGTA
genomic: CTCTGCAATTCCTATCTCCCTACTCAATCTAGGTTTTCTTTTCAGGATCGgttcgttttg ... ttatttgcagAGGGGTAGATTTTTCGGTGGGGTTGCTTGGAATCAGATAAAATGTTTGGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatttttttaaaaatatatttatgtggcggttttgattgttgattttatttgcagAGGGGTAGATTTTTCGGTGGGGTTGCTTGGAATCAGATAAAATGTTTGGTAGGGCTCCCAAGAAAAGCGATAACACTAAGTACTATGATGTTCTTGGAGT
                                     tgttgat  putative branch site (score: 4)
                                           ttttattt  CT-rich tract
     ttttaaaaatatattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttcgttttgtatctaattttccctagaattctgttaatttcctgtttgcttgttcagaaattgctggatttttttaaaaatatatttatgtggcggttttgattgttgattttatttgcagAGGGGTAGATTTTTCGGTGGGGTTGCTTGGAATCAGATAAAATGTTTGGTAGGGCTCCCAAGAAAAGCGATAACACTAAGTACTATGATGTTCTTGGAGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG