Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGTCATCCACCCCCTTAAGGTTTCTCTGGAAGATCTCTACAATGGGACATCCAAGAAACTGTCCCTTTCTCGTAATGTAATCTGCTCAAAGTGCAAGGGgtgagtacaaactatgcagtattctcagttttctgcagtttcgtgtctgcatcttatgactttgtttgtgacttatattgtatcatgattggggtgataatttgcag

Basic information

species Vitis vinifera
transcript Vv13s0073g00560.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0073g00560.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os03g57340.1 (Oryza sativa), 5'ss of exon 3
ACGTCATCCACCCCCTTAAGGTTTCTCTGGAAGATCTCTACAATGGGACATCCAAGAAACTGTCCCTTTCTCGTAATGTAATCTGCTCAAAGTGCAAGGGgtgagtacaaactatgcagtattctcagttttctgcagtttcgtgtctgcatcttatgactttgtttgtgacttatattgtatcatgattggggtgataatttgcag
| ||  | ||||| || |||||||||||||| ||  | |||||||| ||||| ||||| || ||||||||||| |||||  ||||||| |||||||| ||||  ||       || |||  | ||    |   | |    |  ||  |  |   | ||||| |  |  |  || | | |||    || |         |  ||||||
ATGTGGTTCACCCTCTGAAGGTTTCTCTGGAGGAATTGTACAATGGCACATCAAAGAAGCTCTCCCTTTCTCGCAATGTGCTCTGCTCCAAGTGCAATGGgtatgt------cat-cagcttccttttgtgggtcctaaatattgcataaactgtttgactattctgatatctcacactgttctgtgctc--------atcttgcag

upper sequence: Vv13s0073g00560.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G028218_T01 (Zea mays), 5'ss of exon 3
ACGTCATCCACCCCCTTAAGGTTTCTCTGGAAGATCTCTACAATGGGACATCCAAGAAACTGTCCCTTTCTCGTAATGTAATCTGCTCAAAGTGCAAGGGgtgagtacaaactatgcagtattctcagttttctgcagtttcgtgtctgcatcttatgactttgtttgtgacttatattgtatcatgattggggtgataatttgcag
| ||  | || || || |||||||||||||| ||| | |||||||| ||||| ||||| || || || || || |||||  ||||||| |||||||| ||||  ||       || ||  |  |   | |  |   |  |   |  |   ||  |     | | | |  || |  ||   | | ||  |  |  ||  |   |||||
ATGTGGTTCATCCTCTGAAGGTTTCTCTGGAGGATTTGTACAATGGCACATCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGGgtaggtcatctgaatccacaacacaaggatgccaaaaactcaattacaatatgct----ttctatattagattcttaggatctgattgtgtgcttgtaatcgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110693853|gb|EE070447.1|EE070447
EST:     TCCAAGAAACTGTCCCTTTCTCGCAATGTAATCTGCTCAAAGTGCAAGGG                         GAAAGGGTCCAAGTCAGGTGCATCAATGAAGTGTTCTGGGTGTCAAGGATC
genomic: TCCAAGAAACTGTCCCTTTCTCGTAATGTAATCTGCTCAAAGTGCAAGGGgtgagtacaa ... taatttgcagGAAAGGGTCCAAGTCAGGCGCATCAATGAAGTGTTCTGGCTGTCAAGGATC
EST: gi|110688559|gb|EE067247.1|EE067247
EST:     TCCAAGAAACTGTCCCTTTCTCGCAATGTAATCTGCTCAAAGTGCAAGGG                         GAAAGGGTCCAAGTCAGGTGCATCAATGAAGTGTTCTGGGTGTCAAGGATC
genomic: TCCAAGAAACTGTCCCTTTCTCGTAATGTAATCTGCTCAAAGTGCAAGGGgtgagtacaa ... taatttgcagGAAAGGGTCCAAGTCAGGCGCATCAATGAAGTGTTCTGGCTGTCAAGGATC
EST: gi|110724863|gb|EE101065.1|EE101065
EST:     TCCAAGAAACTGTCCCTTTCTCGCAATGTAATCTGCTCAAAGTGCAAGGG                         GAAAGGGTCCAAGTCAGGTGCATCAATGAAGTGTTCTGGGTGTCAAGGATC
genomic: TCCAAGAAACTGTCCCTTTCTCGTAATGTAATCTGCTCAAAGTGCAAGGGgtgagtacaa ... taatttgcagGAAAGGGTCCAAGTCAGGCGCATCAATGAAGTGTTCTGGCTGTCAAGGATC
EST: gi|161716047|gb|FC069120.1|FC069120
EST:     TCCAAGAAACTGTCCCTTTCTCGCAATGTAATCTGCTCAAAGTGCAAGGG                         GAAAGGGTCCAAGTCAGGTGCATCAATGAAGTGTTCTGGGTGTCAAGGATC
genomic: TCCAAGAAACTGTCCCTTTCTCGTAATGTAATCTGCTCAAAGTGCAAGGGgtgagtacaa ... taatttgcagGAAAGGGTCCAAGTCAGGCGCATCAATGAAGTGTTCTGGCTGTCAAGGATC
EST: gi|294965649|gb|GW837248.1|GW837248
EST:     TCCAAGAAACTGTCCCTTTCTCGCAATGTAATCTGCTCAAAGTGCAAGGG                         GAGAGGGTCCAAGTCAGGTGCATCAATGAAGTGTTCTGGGTGTCAAGGATC
genomic: TCCAAGAAACTGTCCCTTTCTCGTAATGTAATCTGCTCAAAGTGCAAGGGgtgagtacaa ... taatttgcagGAAAGGGTCCAAGTCAGGCGCATCAATGAAGTGTTCTGGCTGTCAAGGATC
EST: gi|110687574|gb|EE065142.1|EE065142
EST:     TCCAAGAAACTGTCCCTTTCTCGCAATGTAATCTGCTCAAAGTGCAAGGG                         GAAAGGGTCCAAGTCAGGTGCATCAATGAAGTGTTCTGGGTGTCAAGGATC
genomic: TCCAAGAAACTGTCCCTTTCTCGTAATGTAATCTGCTCAAAGTGCAAGGGgtgagtacaa ... taatttgcagGAAAGGGTCCAAGTCAGGCGCATCAATGAAGTGTTCTGGCTGTCAAGGATC
EST: gi|161720070|gb|FC066726.1|FC066726
EST:     TCCAAGAAACTGTCCCTTTCTCGCAATGTAATCTGCTCAAAGTGCAAGGG                         GAAAGGGTCCAAGTCAGGTGCATCAATGAAGTGTTCTGGGTGTCAAGGATC
genomic: TCCAAGAAACTGTCCCTTTCTCGTAATGTAATCTGCTCAAAGTGCAAGGGgtgagtacaa ... taatttgcagGAAAGGGTCCAAGTCAGGCGCATCAATGAAGTGTTCTGGCTGTCAAGGATC
EST: gi|110701517|gb|EE079177.1|EE079177
EST:     TCCAAGAAACTGTCCCTTTCTCGCAATGTAATCTGCTCAAAGTGCAAGGG                         GAAAGGGTCCAAGTCAGGTGCATCAATGAAGTGTTCTGGGTGTCAAGGATC
genomic: TCCAAGAAACTGTCCCTTTCTCGTAATGTAATCTGCTCAAAGTGCAAGGGgtgagtacaa ... taatttgcagGAAAGGGTCCAAGTCAGGCGCATCAATGAAGTGTTCTGGCTGTCAAGGATC
EST: gi|110700386|gb|EE078366.1|EE078366
EST:     CAAGAAACTGTCCCTTTCTCGCAATGTAATCTGCTCAAAGTGCAAAGG                         GAAAGGGTCCAAGTCAGGTGCATCAATGAAGTGTTCTGGGTGTCAAGGATC
genomic: CAAGAAACTGTCCCTTTCTCGTAATGTAATCTGCTCAAAGTGCAAGGGgtgagtacaa ... taatttgcagGAAAGGGTCCAAGTCAGGCGCATCAATGAAGTGTTCTGGCTGTCAAGGATC
EST: gi|110719344|gb|EE097209.1|EE097209
EST:     TCCAAGAAACTGTCCCTTTCTCGCAATGTAATCTGCTCAAAGTGCAAGGG                         GAAAGGGTCCAAGTCAGGTGCATCAATGAAGTGTTCTGGGTGTCAAGGATC
genomic: TCCAAGAAACTGTCCCTTTCTCGTAATGTAATCTGCTCAAAGTGCAAGGGgtgagtacaa ... taatttgcagGAAAGGGTCCAAGTCAGGCGCATCAATGAAGTGTTCTGGCTGTCAAGGATC
EST: gi|30299616|gb|CB976410.1|CB976410
EST:     TTTCTCGCAATGTAATCTGCTCAAAGTGCAAGGG                         GAAAGGGTCCAAGTCA-CCTGCATCAATGAAGTGTTCTGGGTGTCAAGGAT
genomic: TTTCTCGTAATGTAATCTGCTCAAAGTGCAAGGGgtgagtacaa ... taatttgcagGAAAGGGTCCAAGTCAGGC-GCATCAATGAAGTGTTCTGGCTGTCAAGGAT
EST: gi|161721403|gb|FC071069.1|FC071069
EST:     TCCAAGAAACTGTCCCTTTCTCGCAATGTAATCTGCTCAAAGTGCAAGGG                         GAAAGGGTCCAAGTCAGGTGCATCAATGAAGTGTTCTGGGTGTCAAGGATC
genomic: TCCAAGAAACTGTCCCTTTCTCGTAATGTAATCTGCTCAAAGTGCAAGGGgtgagtacaa ... taatttgcagGAAAGGGTCCAAGTCAGGCGCATCAATGAAGTGTTCTGGCTGTCAAGGATC
EST: gi|110709172|gb|EE084401.1|EE084401
EST:     TCCAAGAAACTGTCCCTTTCTCGCAATGTAATCTGCTCAAAGTGCAAGGG                         GAAAGGGTCCAAGTCAAGTGCATCAATGAAGTGTTCTGGGTGTCAAGGATC
genomic: TCCAAGAAACTGTCCCTTTCTCGTAATGTAATCTGCTCAAAGTGCAAGGGgtgagtacaa ... taatttgcagGAAAGGGTCCAAGTCAGGCGCATCAATGAAGTGTTCTGGCTGTCAAGGATC
EST: gi|110687103|gb|EE064221.1|EE064221
EST:     TCCAAGAAACTGTCCCTTTCTCGCAATGTAATCTGCTCAAAGTGCAAGGG                         GAAAGGGTCCAAGTCAGGTGCATCAATGAAGTGTTCTGGGTGTCAAGGATC
genomic: TCCAAGAAACTGTCCCTTTCTCGTAATGTAATCTGCTCAAAGTGCAAGGGgtgagtacaa ... taatttgcagGAAAGGGTCCAAGTCAGGCGCATCAATGAAGTGTTCTGGCTGTCAAGGATC
EST: gi|110727911|gb|EE105214.1|EE105214
EST:     TCCAAGAAACTGTCCCTTTCTCGCAATGTAATCTGCTCAAAGTGCAAGGG                         GAAAGGGTCCAAGTCAGGTGCATCAATGAAGTGTTCTGGGTGTCAAGGATC
genomic: TCCAAGAAACTGTCCCTTTCTCGTAATGTAATCTGCTCAAAGTGCAAGGGgtgagtacaa ... taatttgcagGAAAGGGTCCAAGTCAGGCGCATCAATGAAGTGTTCTGGCTGTCAAGGATC
EST: gi|26257505|gb|CA808568.1|CA808568
EST:     TCCAAGAAACTGTCCCTTTCTCGCAATGTAATCTGCTCAAAGTGCAAGGG                         GAAAGGGCCCAAGTCAGG
genomic: TCCAAGAAACTGTCCCTTTCTCGTAATGTAATCTGCTCAAAGTGCAAGGGgtgagtacaa ... taatttgcagGAAAGGGTCCAAGTCAGG
EST: gi|161718145|gb|FC068894.1|FC068894
EST:     TCCAAGAAACTGTCCCTTTCTCGCAATGTAATCTGCTCAAAGTGCAAGGG                         GAAAGGGTCCAAGTCAGGTGCATCAATGAAGTGTTCTGGGTGTCAAGGATC
genomic: TCCAAGAAACTGTCCCTTTCTCGTAATGTAATCTGCTCAAAGTGCAAGGGgtgagtacaa ... taatttgcagGAAAGGGTCCAAGTCAGGCGCATCAATGAAGTGTTCTGGCTGTCAAGGATC
EST: gi|10283309|gb|BE846432.1|BE846432
EST:     TCCAAGAAACTGTCCCTTTCTCGCAATGTAATCTGCTCAAAGTGCAAGGG                         GAAAGGGTCCAAGTCAGGTGCATCAATGAAGTGTTCTGGGTGTCAAGGATC
genomic: TCCAAGAAACTGTCCCTTTCTCGTAATGTAATCTGCTCAAAGTGCAAGGGgtgagtacaa ... taatttgcagGAAAGGGTCCAAGTCAGGCGCATCAATGAAGTGTTCTGGCTGTCAAGGATC
EST: gi|110690410|gb|EE067495.1|EE067495
EST:     CTCAAAGTGCAAGGG                         GAAAGGGTCCAAGTCAGGTGCATCAATGAAGTGTTCTGGGTGTCAAGGATC
genomic: CTCAAAGTGCAAGGGgtgagtacaa ... taatttgcagGAAAGGGTCCAAGTCAGGCGCATCAATGAAGTGTTCTGGCTGTCAAGGATC
EST: gi|161721807|gb|FC070158.1|FC070158
EST:     TCCAAGAAACTGTCCCTTTCTCGCAATGTAATCTGCTCAAAGTGCAAGGG                         GAAAGGGTCCAAG
genomic: TCCAAGAAACTGTCCCTTTCTCGTAATGTAATCTGCTCAAAGTGCAAGGGgtgagtacaa ... taatttgcagGAAAGGGTCCAAG
EST: gi|110367088|gb|EC931010.1|EC931010
EST:     TCCAAGAAACTGTCCCTTTCTCGCAATGTAATCTGCTCAAAGTGCAAGGG                         GAAAGGGTCCAAGTCAGGTGCATCAATGAAGTGTTCTGGGTGTCAAGGATC
genomic: TCCAAGAAACTGTCCCTTTCTCGTAATGTAATCTGCTCAAAGTGCAAGGGgtgagtacaa ... taatttgcagGAAAGGGTCCAAGTCAGGCGCATCAATGAAGTGTTCTGGCTGTCAAGGATC
EST: gi|161709203|gb|FC057966.1|FC057966
EST:     TCCAAGAAACTGTCCCTTTCTCGCAATGTAATCTGCTCAAAGTGCAAGGG                         GAAAGGGTCCAAGTCAGGTGCATCAATGAAGTGTTCTGGGTGTCAAGGATC
genomic: TCCAAGAAACTGTCCCTTTCTCGTAATGTAATCTGCTCAAAGTGCAAGGGgtgagtacaa ... taatttgcagGAAAGGGTCCAAGTCAGGCGCATCAATGAAGTGTTCTGGCTGTCAAGGATC
EST: gi|110380006|gb|EC945241.1|EC945241
EST:     TCCAAGAAACTGTCCCTTTCTCGCAATGTAATCTGCTCAAAGTGCAAGGG                         GAAAGGGTCCAAGTCAGGTGCATCAATGAAGTGTTCTGGGTGTCAAGGATC
genomic: TCCAAGAAACTGTCCCTTTCTCGTAATGTAATCTGCTCAAAGTGCAAGGGgtgagtacaa ... taatttgcagGAAAGGGTCCAAGTCAGGCGCATCAATGAAGTGTTCTGGCTGTCAAGGATC
EST: gi|110687757|gb|EE065533.1|EE065533
EST:     TCCAAGAAACTGTCCCTTTCTCGCAATGTAATCTGCTCAAAGTGCAAGGG                         GAAAGGGTCCAAGTCAGGTGCATCAATGAAGTGTTCTGGGTGTCAAGGATC
genomic: TCCAAGAAACTGTCCCTTTCTCGTAATGTAATCTGCTCAAAGTGCAAGGGgtgagtacaa ... taatttgcagGAAAGGGTCCAAGTCAGGCGCATCAATGAAGTGTTCTGGCTGTCAAGGATC
EST: gi|110689394|gb|EE065590.1|EE065590
EST:     TCCAAGAAACTGTCCCTTTCTCGCAATGTAATCTGCTCAAAGTGCAAGGG                         GAAAGGGTCCAAGTCAGGTGCATCAATGAAGTGTTCTGGGTGTCAAGGATC
genomic: TCCAAGAAACTGTCCCTTTCTCGTAATGTAATCTGCTCAAAGTGCAAGGGgtgagtacaa ... taatttgcagGAAAGGGTCCAAGTCAGGCGCATCAATGAAGTGTTCTGGCTGTCAAGGATC
EST: gi|161719134|gb|FC069349.1|FC069349
EST:     TCCATGAAACTGTCCCTTTCTCGCAATGTAATCTGCTCAAAGTGCAAGGG                         GAAAGGGTCCAAGTCAGGTGCATCAATGAAGTGTTCTGGGTGTCAAGGATC
genomic: TCCAAGAAACTGTCCCTTTCTCGTAATGTAATCTGCTCAAAGTGCAAGGGgtgagtacaa ... taatttgcagGAAAGGGTCCAAGTCAGGCGCATCAATGAAGTGTTCTGGCTGTCAAGGATC
EST: gi|110700663|gb|EE077516.1|EE077516
EST:     TCCAAGAAACTGTCCCTTTCTCGCAATGTAATCTGCTCAAAGTGCAAGGG                         GAAAGGGTCCAAGTCAGGTGCATCAATGAAGTGTTCTGGGTGTCAAGGATC
genomic: TCCAAGAAACTGTCCCTTTCTCGTAATGTAATCTGCTCAAAGTGCAAGGGgtgagtacaa ... taatttgcagGAAAGGGTCCAAGTCAGGCGCATCAATGAAGTGTTCTGGCTGTCAAGGATC
EST: gi|110732660|gb|EE108151.1|EE108151
EST:     TCCAAGAAACTGTCCCTTTCTCGCAATGTAATCTGCTCAAAGTGCAAGGG                         GAAAGGGTCCAAGTCAGGTGCATCAATGAAGTGTTCTGGGTGTCAAGGATC
genomic: TCCAAGAAACTGTCCCTTTCTCGTAATGTAATCTGCTCAAAGTGCAAGGGgtgagtacaa ... taatttgcagGAAAGGGTCCAAGTCAGGCGCATCAATGAAGTGTTCTGGCTGTCAAGGATC
EST: gi|161716635|gb|FC069142.1|FC069142
EST:     TCCAAGAAACTGTCCCTTTCTCGCAATGTAATCTGCTCAAAGTGCAAGGG                         GAAAGGGTCCAAGTCAGGTGCATCAATGAAGTGTTCTGGGTGTCAAGGATC
genomic: TCCAAGAAACTGTCCCTTTCTCGTAATGTAATCTGCTCAAAGTGCAAGGGgtgagtacaa ... taatttgcagGAAAGGGTCCAAGTCAGGCGCATCAATGAAGTGTTCTGGCTGTCAAGGATC
EST: gi|161716378|gb|FC064903.1|FC064903
EST:     TCCAAGAAACTGTCCCTTTCTCGCAATGTAATCTGCTCAAAGTGCAAGGG                         GAAAGGGTCCAAGT
genomic: TCCAAGAAACTGTCCCTTTCTCGTAATGTAATCTGCTCAAAGTGCAAGGGgtgagtacaa ... taatttgcagGAAAGGGTCCAAGT
EST: gi|37189828|gb|CF609177.1|CF609177
EST:     TCCAAGAAACTGTCCCTTTCTCGCAATGTAATCTGCTCTAAGTGCAAGGG                         GAAAGGGTCCAAGTCAGGTGCATCAATGAAGTGTTCTGGGTGTCAAGGATC
genomic: TCCAAGAAACTGTCCCTTTCTCGTAATGTAATCTGCTCAAAGTGCAAGGGgtgagtacaa ... taatttgcagGAAAGGGTCCAAGTCAGGCGCATCAATGAAGTGTTCTGGCTGTCAAGGATC
EST: gi|33402992|gb|CF208619.1|CF208619
EST:     TCCAAGAAACTGTCCCTTTCTCGCAATGTAATCTGCTCAAAGTGCAAGGG                         GAAAGGGTCCAAGTCAGGTGCATCAATGAAGTGTTCTGGGTGTCAAGGATC
genomic: TCCAAGAAACTGTCCCTTTCTCGTAATGTAATCTGCTCAAAGTGCAAGGGgtgagtacaa ... taatttgcagGAAAGGGTCCAAGTCAGGCGCATCAATGAAGTGTTCTGGCTGTCAAGGATC
EST: gi|110356751|gb|EC919805.1|EC919805
EST:     TCCAAGAAACTGTCCCTTTCTCGCAATGTAATCTGCTCAAAGTGCAAGGG                         GAAAGGGTCCAAGTCAGGTGCATCAATGAAGTGTTCTGGGTGTCAAGGATC
genomic: TCCAAGAAACTGTCCCTTTCTCGTAATGTAATCTGCTCAAAGTGCAAGGGgtgagtacaa ... taatttgcagGAAAGGGTCCAAGTCAGGCGCATCAATGAAGTGTTCTGGCTGTCAAGGATC
EST: gi|161717969|gb|FC069264.1|FC069264
EST:     TCCAAGAAACTGTCCCTTTCTCGCAATGTAATCTGCTCAAAGTGCAAGGG                         GAAAGGGTCCAA
genomic: TCCAAGAAACTGTCCCTTTCTCGTAATGTAATCTGCTCAAAGTGCAAGGGgtgagtacaa ... taatttgcagGAAAGGGTCCAA
EST: gi|110708416|gb|EE085929.1|EE085929
EST:     TCCAAGAAACTGTCCCTTTCTCGCAATGTAATCTGCTCAAAGTGCAAGGG                         GAAAGGGTCCAAGTCAGGTGCATCAATGAAGTGTTCTGGGTGTCAAGGATC
genomic: TCCAAGAAACTGTCCCTTTCTCGTAATGTAATCTGCTCAAAGTGCAAGGGgtgagtacaa ... taatttgcagGAAAGGGTCCAAGTCAGGCGCATCAATGAAGTGTTCTGGCTGTCAAGGATC
EST: gi|110394251|gb|EC958916.1|EC958916
EST:     AGAAACTGTCCCTTTCTCGCAATGTAATCTGCTCAAAGTGCAAGGG                         GAAAGGGTCCAAGTCAGGTGCATCAATGAAGTGTTCTGGGTGTCAAGGATC
genomic: AGAAACTGTCCCTTTCTCGTAATGTAATCTGCTCAAAGTGCAAGGGgtgagtacaa ... taatttgcagGAAAGGGTCCAAGTCAGGCGCATCAATGAAGTGTTCTGGCTGTCAAGGATC
EST: gi|110687093|gb|EE064204.1|EE064204
EST:     TCCAAGAAACTGTCCCTTTCTCGCAATGTAATCTGCTCAAAGTGCAAGGG                         GAAAGGGTCCAAGTCAGGTGCATCAATGAAGTGTTCTGGGTGTCAAGGATC
genomic: TCCAAGAAACTGTCCCTTTCTCGTAATGTAATCTGCTCAAAGTGCAAGGGgtgagtacaa ... taatttgcagGAAAGGGTCCAAGTCAGGCGCATCAATGAAGTGTTCTGGCTGTCAAGGATC
EST: gi|110703858|gb|EE081072.1|EE081072
EST:     TCCAAGAAACTGTCCCTTTCTCGCAATGTAATCTGCTCAAAGTGCAAGGG                         GAAAGGGTCCAAGTCAGGTGCATCAATGAAGTGTTCTGGGTGTCAAGGATC
genomic: TCCAAGAAACTGTCCCTTTCTCGTAATGTAATCTGCTCAAAGTGCAAGGGgtgagtacaa ... taatttgcagGAAAGGGTCCAAGTCAGGCGCATCAATGAAGTGTTCTGGCTGTCAAGGATC
EST: gi|46917908|gb|CN547237.1|CN547237
EST:     AATCTGCTCAAAGTGCAAGGG                         GAAAGGGTCCAAGTCAGGTGCATCAATGAAGTGTTCTGGGTGTCAAGGATC
genomic: AATCTGCTCAAAGTGCAAGGGgtgagtacaa ... taatttgcagGAAAGGGTCCAAGTCAGGCGCATCAATGAAGTGTTCTGGCTGTCAAGGATC
EST: gi|161720402|gb|FC069851.1|FC069851
EST:     TCCAAGAAACTGTCCCTTTCTCGCAATGTAATCTGCTCAAAGTGCAAGGG                         GAAAGGGTCCAAGTCAGGTGCATCAATGAAGTGTTCTGGGTGTCAAGGATC
genomic: TCCAAGAAACTGTCCCTTTCTCGTAATGTAATCTGCTCAAAGTGCAAGGGgtgagtacaa ... taatttgcagGAAAGGGTCCAAGTCAGGCGCATCAATGAAGTGTTCTGGCTGTCAAGGATC
EST: gi|161719216|gb|FC065444.1|FC065444
EST:     TCCAAGAAACTGTCCCTTTCTCGCAATGTAATCTGCTCAAAGTGCAAGGG                         GAAAGGGTCCAAGTCAGGTGCATCAATGAAGTGTTCTGGGTGTCAAGGATC
genomic: TCCAAGAAACTGTCCCTTTCTCGTAATGTAATCTGCTCAAAGTGCAAGGGgtgagtacaa ... taatttgcagGAAAGGGTCCAAGTCAGGCGCATCAATGAAGTGTTCTGGCTGTCAAGGATC
EST: gi|33408361|gb|CF213988.1|CF213988
EST:     TCCAAGAAACTGTCCCTTTCTCGCAATGTAATCTGCTCAAAGTGCAAGGG                         GAAAGGGTCCAAGTCAGGTGCATCAATGAAGTGTTCTGGGTGTCAAGGATC
genomic: TCCAAGAAACTGTCCCTTTCTCGTAATGTAATCTGCTCAAAGTGCAAGGGgtgagtacaa ... taatttgcagGAAAGGGTCCAAGTCAGGCGCATCAATGAAGTGTTCTGGCTGTCAAGGATC
EST: gi|110370683|gb|EC932670.1|EC932670
EST:     TCCAAGAAACTGTCCCTTTCTCGCAATGTAATCTGCTCAAAGTGCAAGGG                         GAAAGGGTCCAAGTCAGGTGCATCAATGAAGTGTTCTGGGTGTCAAGGATC
genomic: TCCAAGAAACTGTCCCTTTCTCGTAATGTAATCTGCTCAAAGTGCAAGGGgtgagtacaa ... taatttgcagGAAAGGGTCCAAGTCAGGCGCATCAATGAAGTGTTCTGGCTGTCAAGGATC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACGTCATCCACCCCCTTAAGGTTTCTCTGGAAGATCTCTACAATGGGACATCCAAGAAACTGTCCCTTTCTCGTAATGTAATCTGCTCAAAGTGCAAGGGgtgagtacaaactatgcagtattctcagttttctgcagtttcgtgtctgcatcttatgactttgtttgtgacttatattgtatcatgattggggtgataatttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA