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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACTATCGTACATTCTTCTTAGCATTAGCAGTTGGTTCATGGCTCTTTCTTGGCTTTTTGCTCCCTATTTGTTCAATCCATCTGGTTTTGAGTGGCAGAAgtaagtatcatttttctaattttctctctcatggatttgctcatgttttattaaccatttgttttaccccttttag

Basic information

species Vitis vinifera
transcript Vv06s0004g01200.t01
intron # 43
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g01200.t01 (Vitis vinifera), 5'ss of exon 43
lower sequence: LOC_Os03g02756.2 (Oryza sativa), 5'ss of exon 12
CACTATCGTACATTCTTCTTAGCATTAGCAGTTGGTTCATGGCTCTTTCTTGGCTTTTTGCTCCCTATTTGTTCAATCCATCTGGTTTTGAGTGGCAGAAgtaagt-----atcatttttctaattttctctctcatggatttgctcatgttttattaaccat-----ttgttttaccccttttag
|| |    |||||| | |||  ||| || || ||||| |||||  ||||||||||||||||||| ||  | |||||||||||||| ||||| |||||||||||||      | |||| |    || |  |       | | ||     ||   |   ||  ||     ||    |||| || | ||
CAGTTGGCTACATTTTGCTTTCCATAAGTAGCTGGTTTATGGCAGTTTCTTGGCTTTTTGCTCCATACATATTCAATCCATCTGGATTTGAATGGCAGAAgtaagctgctaagcattctatgcatgtgttactctgcgtaattatatttgaaattcgaattatcaggattaaaatacctctctcag

upper sequence: Vv06s0004g01200.t01 (Vitis vinifera), 5'ss of exon 43
lower sequence: GRMZM2G453794_T01 (Zea mays), 5'ss of exon 11
CACTATCGTACATTCTTCTTAGCATTAGCAGTTGGTTCATGGCTCTTTCTTGGCTTTTTGCTCCCTATTTGTTCAATCCATCTGGTTTTGAGTGGCAGAAgtaagtatcat----ttttctaattttctctctcatggat-----ttgctcatgttttattaaccatttg--ttttaccccttttag
|| |    || ||| | ||    || ||||||||| | |||||  | ||||||||||||||||||||||| || || |||||||| ||||| ||||||||||||| | |      |||| |   | | | |   ||   |     |||    | |   ||||    |       ||  |||| ||||
CAGTTGGCTATATTTTACTCTCTATAAGCAGTTGGATTATGGCATTGTCTTGGCTTTTTGCTCCCTATTTATTTAACCCATCTGGATTTGAATGGCAGAAgtaagcagccaagcattttgtgtatctatgtactataagttcaaattgtcattatgagattagatttcaaacccttctccctcttag

upper sequence: Vv06s0004g01200.t01 (Vitis vinifera), 5'ss of exon 43
lower sequence: GLYMA20G38860.1 (Glycine max), 5'ss of exon 48
CACTATCGTACATTCTTCTTAGCATTAGCAGTTGGTTCATGGCTCTTTCTTGGCTTTTTGCTCCCTATTTGTTCAATCCATCTGGTTTTGAGTGGCAGAAgtaagtatcatttttctaattttctctc--tcatggatttgctcatgttttattaaccatttgttttac----cccttttag
|||| || || |||||| | || || ||||||||||| |||||||| || ||| | |||||||| ||||| ||||| |||||||| ||||||||||| |||||||||| || | | ||  ||| | |   || |||  |  ||||||  | || |    |||  || ||    |  ||||||
CACTCTCATATATTCTTTTGAGTATAAGCAGTTGGTTTATGGCTCTATCCTGGTTGTTTGCTCCATATTTATTCAACCCATCTGGATTTGAGTGGCAAAAgtaagtattatctatttatctttgtattcttcctggcatgtctcatgagtcatgattattttccttcacggtgcttttttag

upper sequence: Vv06s0004g01200.t01 (Vitis vinifera), 5'ss of exon 43
lower sequence: GLYMA10G44150.1 (Glycine max), 5'ss of exon 46
CACTATCGTACATTCTTCTTAGCATTAGCAGTTGGTTCATGGCTCTTTCTTGGCTTTTTGCTCCCTATTTGTTCAATCCATCTGGTTTTGAGTGGCAGAAgtaagtatcatttttctaattttctctctcatggatttg-ctcatgttttattaaccatttgttttaccccttttag
|||| || || |||||| | || || ||||||||||| |||||||| || ||| | |||||||| ||||| ||||| || ||||| ||||||||||| |||||||||| || | | ||  ||   || | |  |   || |||||| ||  ||  ||        |     ||||||
CACTCTCATATATTCTTTTGAGTATAAGCAGTTGGTTTATGGCTCTATCCTGGTTGTTTGCTCCATATTTATTCAACCCGTCTGGATTTGAGTGGCAAAAgtaagtattatctatttatcttgaactttgacaggcatgtctcatgattattttccctcacacagtgttt-ttttag

upper sequence: Vv06s0004g01200.t01 (Vitis vinifera), 5'ss of exon 43
lower sequence: AT3G07160.1 (Arabidopsis thaliana), 5'ss of exon 45
CACTATCGTACATTCTTCTTAGCATTAGCAGTTGGTTCATGGCTCTTTCTTGGCTTTTTGCTCCCTATTTGTTCAATCCATCTGGTTTTGAGTGGCAGAAgtaagtatcatttttctaattttctctctc-----atggatttgctcatgttttattaaccatttgttttaccc--cttttag
|  | || ||||| || || |   ||||||| |||||  ||||| |||||||||| |||||||| ||  | ||||| ||  | || ||||||||||||||||||||     | |  || || | ||          | || |  |   | | | ||| | ||    |   |     |||| ||
CGGTTTCCTACATCCTGCTGACAGTTAGCAGCTGGTTTTTGGCTGTTTCTTGGCTGTTTGCTCCGTACCTATTCAACCCTGCCGGATTTGAGTGGCAGAAgtaagtggtgctatcttatttatatcatgttgagtgttgagtaacgtgtttctcattgaacaacaataaaattatgctttcag

upper sequence: Vv06s0004g01200.t01 (Vitis vinifera), 5'ss of exon 43
lower sequence: PP1S160_88V6.1 (Physcomitrella patens), 5'ss of exon 46
CACTATCGTACATTCTTCTTAGCATTAGCAGTTGGTTCATGGCTCTTTCTTGGCTTTTTGCTCCCTATTTGTTCAATCCATCTGGTTTTGAGTGGCAGAAgtaagtatcatttttctaattttctctct-----catggatttgctcatgttttattaaccatttgttt--taccccttttag--------------------------------------------------------------------------------------------------------
||    | |||||||| || |   | ||    |||||| | |||||||| |||||||  || || ||| | ||||||||||| ||||| |||||||| |||||||  |  |       ||| ||| |       || | |||   |  | ||  | ||  | ||| |||  |     |||||                                                                                                         
CAGCCACATACATTCTGCTCACTTTCAGTTCCTGGTTCTTAGCTCTTTCATGGCTTTACGCGCCATATATTTTCAATCCATCAGGTTTCGAGTGGCAAAAgtaagcgttgtaacgtagattgtcttttgttgaacacgaattgatttcttttccaatagtcttttatttatttattattttaacgaaaggatatttataaaagattccatgcgcaaaatcttagttctgcagaggatgtctcattatcactatattctgatctacgtaacattgaaacctgacacag

upper sequence: Vv06s0004g01200.t01 (Vitis vinifera), 5'ss of exon 43
lower sequence: PP1S88_136V6.1 (Physcomitrella patens), 5'ss of exon 44
CACTATCGTACATTCTTCTTAGCATTAGCAGTTGGTTCATGGCTCTTTCTTGGCTTTTTGCTCCCTATTTGTTCAATCCATCTGGTTTTGAGTGGCAGAAgtaagtatcatttttctaatt--ttctctctcatggatttgctcatgttttattaaccatt-----tgttttaccccttttag----------------------------------------------------
|| |  | |  ||  | || |   | ||   ||||||| | ||| | || |||||||| || |||||  | || ||||||||||||||||||||||| ||||||| |  ||| |||   ||  || | | |||| |     || ||   |||  ||  |       |    ||  | ||| |                                                     
CAGTCACTTTTATCTTGCTGACGTTCAGTTCTTGGTTCCTAGCTTTATCCTGGCTTTTCGCACCCTACATATTTAATCCATCTGGTTTTGAGTGGCAAAAgtaagcacgattcttccctttgattatgtttcattgggaaccttattggttagcaattaaacagggtacgatattcttttcacgttgaaaccttgagtacaatgacaattgaggatgtgaatttatgtgctgcag

upper sequence: Vv06s0004g01200.t01 (Vitis vinifera), 5'ss of exon 43
lower sequence: PP1S67_70V6.1 (Physcomitrella patens), 5'ss of exon 41
CACTATCGTACATTCTTCTTAGCATTAGCAGTTGGTTCATGGCTCTTTCTTGGCTTTTTGCTCCCTATTTGTTCAATCCATCTGGTTTTGAGTGGCAGAAgtaagtatcatttttctaattttctctct-catggatttgc-tcatgtt--ttattaaccatttgtt--ttaccccttttag----------------------------------------------------------------------------------------------
|| |  | |||||| | || |   | ||    |||||| |||| ||||| ||||| ||||| || ||| | ||||| |||||||| || || ||||||||||||| |  |    |||  |||||  | |  || |||     ||||| |   |   |  |||||||     ||   | |||                                                                                               
CAGTTACTTACATTTTGCTCACATTCAGTTCCTGGTTCCTGGCGCTTTCGTGGCTCTTTGCGCCATATGTTTTCAACCCATCTGGCTTCGAATGGCAGAAgtaagcactacagctcttgttttcgttttgtattgatcaatgtcatgatgtctgccattcatttgtaagcaacaagtgttacatgatagtttgtgtcctctgaggtcttacgttgtaggagtggtctttcgctcaataatctatttggtcttacaaaatgtaaaattttgatacag

upper sequence: Vv06s0004g01200.t01 (Vitis vinifera), 5'ss of exon 43
lower sequence: PP1S18_300V6.2 (Physcomitrella patens), 5'ss of exon 24
-CACTATCGTACATTCTTCTTAGCATTAGCAGTTGGTTCATGGCTCTTTCTTGGCTTTTTGCTCCCTATTTGTTCAATCCATCTGGTTTTGAGTGGCAGAAgtaagtatc-----atttttctaattttctctctcatggattt-gctcatgtttt---attaaccatttgttttaccccttttag------------------------------------------------------------------
   | | | ||||||||||| |   |||||||||||||  |||||||||| ||| | |||||||| |   | |||||||| || || ||||| ||||||||||||| | |     |  ||  | |  || |       |  |||   |   ||  |   ||| ||    |   || ||   || ||                                                                  
CTGCCAGC-TACATTCTTCTCACATTTAGCAGTTGGTTTCTGGCTCTTTCATGGTTATTTGCTCCTTTCGTCTTCAATCCTTCAGGATTTGAATGGCAGAAgtaagaaaccacgaacattcttgacctttttcgatgcgtttttcatttgggtccttcgattgacatggttcctttccgacttcagtcttaaaagtgggtggcctattgacttcgggcaccaggttctgattttcttcctcaataaattcag