Sequence
atgc intronic sequence ATGC exonic sequenceTATGGCCATCCAGATGTTTTTGATAGAGTTTTCCATATAACACGAGGTGGTATCAGCAAGGCCTCTCGAGTTATCAACATTAGTGAAGATATATATGCTGgtatgattgttttcctaataaaatgccattataattgaatattttgttgttatttgtcaggtttatttcctgcatattttgttctcatgctggtgacaca...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g01200.t01 (Vitis vinifera), 5'ss of exon 36
lower sequence: LOC_Os03g02756.2 (Oryza sativa), 5'ss of exon 5
TATGGCCATCCAGATGTTTTTGATAGAGTTTTCCATATAACACGAGGTGGTATCAGCAAGGCCTCTCGAGTTATCAACATTAGTGAAGATATATATGCTGgtatgattgttttcctaataaaatgccattataattgaatattttgttgttatttgtcaggtttatttcctgcatattttgttctcat-gctggtgacaca-
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TATGGCCATCCAGATGTTTTTGATAGAATTTTTCATATAACGAGGGGTGGAATAAGTAAGGCCTCCCGTGTCATCAATATCAGTGAGGATATTTATGCAGgtagggctagtggccttatta--ttctgtctttttctcaattctggttgttgcatgtttagtctatttcaggttgcattattaataatagcccattacattc
upper sequence: Vv06s0004g01200.t01 (Vitis vinifera), 5'ss of exon 36
lower sequence: GRMZM2G453794_T01 (Zea mays), 5'ss of exon 4
TATGGCCATCCAGATGTTTTTGATAGAGTTTTCCATATAACACGAGGTGGTATCAGCAAGGCCTCTCGAGTTATCAACATTAGTGAAGATATATATGCTGgtatgatt----gttttcctaataaaatgcca-ttataattgaatat-tttgttgttatttgtcaggtttatttcctgcatattttgttctcatgctggtgacaca
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TATGGTCATCCAGATGTTTTTGATAGAATTTTTCATATAACAAGGGGTGGAATTAGTAAGGCCTCTCGCAGCATCAATATCAGTGAGGATATATATGCAGgttaaacttgtagtctttttcttcttttcccaattattttggcttgtctttaagattgtagtgcagatcttactgatgcat-ttgcatctatgaactgcag-----
upper sequence: Vv06s0004g01200.t01 (Vitis vinifera), 5'ss of exon 36
lower sequence: GLYMA20G38860.1 (Glycine max), 5'ss of exon 41
TATGGCCATCCAGATGTTTTTGATAGAGTTTTCCATATAACACGAGGTGGTATCAGCAAGGCCTCTCGAGTTATCAACATTAGTGAAGATATATATGCTGgtatgattgttttcctaataaaatgccattataattgaatattttgttgttatttgtcaggtttat-----ttcctgcatattttgttctcatgctggtgacaca
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TATGGGCATCCTGATGTTTTTGATAGAATATTCCACATAACCCGTGGTGGTATCAGCAAGGCTTCCCGTGTTATCAACATTAGTGAAGATATCTATTCAGgtatggctgttgcttttgctgcata--gttat--tttgctgttctggtgcaggggggcaaaatgctgcaaattcgcaatcaagtaatttagctaccaatcctac-
upper sequence: Vv06s0004g01200.t01 (Vitis vinifera), 5'ss of exon 36
lower sequence: GLYMA10G44150.2 (Glycine max), 5'ss of exon 39
TATGGCCATCCAGATGTTTTTGATAGAGTTTTCCATATAACACGAGGTGGTATCAGCAAGGCCTCTCGAGTTATCAACATTAGTGAAGATATATATGCTGgtatgattgtt-ttcctaataaaatgccattataattgaatatttt-----gttgttatttgtcaggtttatttcctgcatattttgttctcatgctggtgacaca
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TATGGGCATCCTGATGTTTTTGATAGAATATTCCACGTAACCCGTGGTGGTATCAGCAAGGCTTCCCGTGTTATCAACATTAGTGAAGATATCTATTCAGgtatggctgttgcttttgctgcatagaaattttgcttttctggttcaggggggcaaaatgctgcaaatttgcaatccagtaatttagctaccaatcctac------
upper sequence: Vv06s0004g01200.t01 (Vitis vinifera), 5'ss of exon 36
lower sequence: AT3G07160.1 (Arabidopsis thaliana), 5'ss of exon 38
TATGGCCATCCAGATGTTTTTGATAGAGTTTTCCATATAACACGAGGTGGTATCAGCAAGGCCTCTCGAGTTATCAACATTAGTGAAGATATATATGCTGgtatgattgttttcctaataaa---atgccattataattg---aatattttgttgttatt---------------tgtcaggtttatttcctgcatatttt---gttctcatgctggtgacaca------------------------------------
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TATGGTCATCCAGATGTCTTTGACAGAGTATTTCATATTACACGTGGTGGTATCAGCAAGGCCTCTCGGGTCATCAATATTAGTGAAGATATATTTGCTGgtaaatttgattttttaattgacagttaccttcaaaactgttcgatgttttaagaatataaaaacacatgaataatgaaaagtgcaattctgagccattttttaataccaatttcttccacacatgatggacgttgattatatgcctctacggtttccagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30252507|gb|CB970058.1|CB970058EST: TATCAGCAAGGCCTCTCGAGTTATCAACATTAGTGAAGATATATATGCTG GATTCAATTCAACATTGCGCCAAGGGAATGTTACTCATCATGAATATATTC
genomic: TATCAGCAAGGCCTCTCGAGTTATCAACATTAGTGAAGATATATATGCTGgtatgattgt ... tgaaatgcagGATTCAATTCAACATTGCGCCAAGGGAATGTTACTCATCATGAATATATTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TATGGCCATCCAGATGTTTTTGATAGAGTTTTCCATATAACACGAGGTGGTATCAGCAAGGCCTCTCGAGTTATCAACATTAGTGAAGATATATATGCTGgtatgattgttttcctaataaaatgccattataattgaatattttgttgttatttgtcaggtttatttcctgcatattttgttctcatgctggtgacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aataaaa