Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   		27  
 5'  3'   		28  
 5'  3'   		29  
 5'  3'   		30  
 5'  3'   		31  
 5'  3'   		32  
 5'  3'   		33  
 5'  3'   		34  
 5'  3'   		35  
 5'  3'   		36  
 5'  3'   		37  
 5'  3'   		38  
 5'  3'   		39  
 5'  3'   		40  
 5'  3'   
41  
 5'  3'   		42  
 5'  3'   		43  
 5'  3'   		44  
 5'  3'   		45  
 5'  3'   		46  
 5'  3'   		47  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAACATAGAGGAAAAACATCGTTTGTTGAGCATCGGACCTTTCTTCATCTTTACCATAGTTTTCATCGCCTGTGGATATTTCTTTTTATGATGTTTCAGgtttgtgggtttgccgtaatagtttatctatgcacacttccatttctaatgtgtactgagattgcagaactaccacctgtttcttccattttattttatt...

Basic information

species Vitis vinifera
transcript Vv06s0004g01200.t01
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g01200.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GRMZM2G442324_T02 (Zea mays), 5'ss of exon 8
CAAACATAGAGGAAAAACATCGTTTGTTGAGCATCGGACCTTTCTTCATCTTTACCATAGTTTTCATCGCCTGTGGATATTTCTTTTTATGATGTTTCAGgtttgtg-ggtttgccgtaatagtttatctatgcacacttccatttctaat-gtgtactgagattgcagaactaccacctgtttcttccattttattttatt
  | ||    ||||| ||||| ||||| || ||| |||| ||||||||||||||||| || ||||||||||| ||||| || ||| ||||||||||||||||   ||    ||   || ||  |     ||| |    ||   |||   ||   ||||  |     ||    ||  |    ||  |    |||  |||||||
TCATCACTACGGAAAGACATCTTTTGTGGAACATAGGACTTTTCTTCATCTTTACCACAGCTTTCATCGCCTTTGGATGTTCCTTATTATGATGTTTCAGgtgaatgcaaattctagtcatgctaccattataccttattttgtttgggatcaagtacccactggccactggtataaggaattctta--gtttggttttatt

upper sequence: Vv06s0004g01200.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA10G44150.1 (Glycine max), 5'ss of exon 13
CAAACATAGAGGAAAAACATCGTTTGTTGAGCATCGGACCTTTCTTCATCTTTACCATAGTTTTCATCGCCTGTGGATATTTCTTTTTATGATGTTTCAGgtttgtgggtttgccgtaatagtttatctatgcacact--tccatttctaatgtgtactgagattgcagaactaccacctgtttcttccattttattttatt---
 |  |||   ||||||||||| |||||||||||||| || ||| |||||||||| ||||| || || ||  ||||||||||||| || ||||||||||||||||||   |||       |  |||||   | || | |  |  | || |      | ||     | |  | || |    | |  |    |  || | || ||   
TAGGCATCAGGGAAAAACATCTTTTGTTGAGCATCGAACTTTTTTTCATCTTTATCATAGCTTCCACCGATTGTGGATATTTCTATTCATGATGTTTCAGgtttgtacatttat-----ttatttattcttacatagtgatgaacttttgccaaatgcttgctgttctcatcttctgtttttagcactgaacttctgtttttcct

upper sequence: Vv06s0004g01200.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA20G38860.1 (Glycine max), 5'ss of exon 13
CAAACATAGAGGAAAAACATCGTTTGTTGAGCATCGGACCTTTCTTCATCTTTACCATAGTTTTCATCGCCTGTGGATATTTCTTTTTATGATGTTTCAGgtttgtgggtttgc---cgtaatagtttatctatgc---acacttccatttctaatgtgtactgagattgcagaact-accacctgtttcttccattttattttatt
 |  |||   || |||||||| ||||| |||||||| || ||| |||||||||| ||||| || || ||  ||||||||||||| || ||||||||||||||||||   ||      | || |  |  |  | |||   |  ||| |  |||| || ||   |    ||  |||| | | |   ||||| | |  ||     ||   
TAGGCATCAGGGGAAAACATCTTTTGTGGAGCATCGAACTTTTTTTCATCTTTATCATAGCTTCCACCGATTGTGGATATTTCTATTCATGATGTTTCAGgtttgtacattcatttacttagtcatgaacttttgccaaatgcttgctgttctcatctgctgt----ttttagaattgaacttttgtttttcctcttcagactt---

upper sequence: Vv06s0004g01200.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: AT3G07160.1 (Arabidopsis thaliana), 5'ss of exon 13
CAAACATAGAGGAAAAACATCGTTTGTTGAGCATCGGACCTTTCTTCATCTTTACCATAGTTTTCATCGCCTGTGGATATTTCTTTTTATGATGTTTCAGgtttgtgggtttgccgtaatagtttatctatgcacacttccatttctaatgtgtactgagattgcagaactaccacctgtttcttccattttattttatt-
 |||||| |||||||||| || ||||||||||| ||||| ||| | ||||| ||||| ||||| |||||  | ||||||||||||  |||||||||||||||||||      | |  |  | |  || |||    | | |  |||||      | || |||    |    ||      | || | |  |  |    |  | 
AAAACATCGAGGAAAAACTTCCTTTGTTGAGCACCGGACATTTTTGCATCTGTACCACAGTTTCCATCGGTTATGGATATTTCTTGCTATGATGTTTCAGgtttgtaatcccgtctcaggattccatttatttgtaatgctctttctcgataatcctcagaagatacttatagtcaacgcttatcct-tggtggcctgctg