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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTCTCTTCTTTAGCCTTATTTATGTCCAATCAAGAAACTAGCTTTGTTACTCTAGGCCAGCGTGTTCTGGCAAAACCTTTAAAgtaagttcatttaattaagcaagcaatttatttgatgtcatatcattttaaatttgggataactggagctgaaatctttaataatggccag

Basic information

species Vitis vinifera
transcript Vv06s0004g01200.t01
intron # 35
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g01200.t01 (Vitis vinifera), 5'ss of exon 35
lower sequence: LOC_Os03g02756.1 (Oryza sativa), 5'ss of exon 4
TGTCTCTTCTTTAGCCTTATTTATGTCCAATCAAGAAACTAGCTTTGTTACTCTAGGCCAGCGTGTTCTGGCAAAACCTTTAAAgtaagttcattta-attaagcaagcaatttatttgatgtcatatcattttaaatttgggataactggagct--gaaatctttaataatggccag
||| |||||  | ||||  |||||||||||||| |||||||| ||||| ||  | || |||||||||||||| || ||  | |||||||| | |||| || |   |     | ||||| |||     |||||| || ||    |          |  ||| |||||   |        
TGTTTCTTCGCTGGCCTCGTTTATGTCCAATCAGGAAACTAGTTTTGTCACATTGGGACAGCGTGTTCTGGCCAATCCACTGAAgtaagtgcttttacataatatatattttctatttcatga---gtcatttcaagttacatactgtcaacatttggaattcttttgcag-------

upper sequence: Vv06s0004g01200.t01 (Vitis vinifera), 5'ss of exon 35
lower sequence: GLYMA10G44150.2 (Glycine max), 5'ss of exon 38
TGTCTCTTCTTTAGCCTTATTTATGTCCAATCAAGAAACTAGCTTTGTTACTCTAGGCCAGCGTGTTCTGGCAAAACCTTTAAAgtaagttcattt--aattaagcaagcaatttatttgatgtcatatcattttaaatttgggataactggagctgaaatctttaataatggccag
|||||| ||| |||| | |||||||||||||||||||||||| ||||| ||| |||| ||||| ||| | ||||| || || |||||||  |||||  ||||||  ||   |||| |||  |     ||||   ||| | ||  | || ||  |||  |   ||||           
TGTCTCATCTCTAGCGTCATTTATGTCCAATCAAGAAACTAGTTTTGTGACTTTAGGGCAGCGAGTTTTAGCAAATCCATTGAAgtaagcccattttaaattaaataa-tgatttcttttgtcaagaatcaaactaagtatg--acaa-tgatgctcta---tttag----------

upper sequence: Vv06s0004g01200.t01 (Vitis vinifera), 5'ss of exon 35
lower sequence: GLYMA20G38860.1 (Glycine max), 5'ss of exon 40
TGTCTCTTCTTTAGCCTTATTTATGTCCAATCAAGAAACTAGCTTTGTTACTCTAGGCCAGCGTGTTCTGGCAAAACCTTTAAAgtaagttcatttaattaagcaagcaatttatttgatgtcatatcattttaaatttgggataactggagctgaaatctttaataatggccag
|||||| |||||||| | |||||||||||||||||||||||| ||||| ||| | || ||||| ||| | ||||| || || |||||||  ||||| |  ||  ||  |||  ||||   ||||      || ||| |  | || ||    | ||   | || |           
TGTCTCATCTTTAGCATCATTTATGTCCAATCAAGAAACTAGTTTTGTGACTTTGGGGCAGCGAGTTTTAGCAAATCCATTGAAgtaagcccatttta--aattaaataatg-atttctcgtcaaga---ttcaaactaagtatgac-aatgatgctctattcag----------

upper sequence: Vv06s0004g01200.t01 (Vitis vinifera), 5'ss of exon 35
lower sequence: AT3G07160.1 (Arabidopsis thaliana), 5'ss of exon 37
TGTCTCTTCTTTAGCCTTATTTATGTCCAATCAAGAAACTAGCTTTGTTACTCTAGGCCAGCGTGTTCTGGCAAAACCTTTAAAgtaagttcatttaattaagcaagcaatttatttgatgtcatatcattttaaatttgggataactggagctgaaatctttaataatggccag
|||||| || || || |  || ||||||||||||||||| |||||||| |||||||| || || ||  |||||||||| ||||||||||||  |   | |||        ||||| |   || | |  | || || |  |    ||       |  | | |||   |||  | ||
TGTCTCCTCCTTGGCATCTTTCATGTCCAATCAAGAAACCAGCTTTGTAACTCTAGGTCAACGAGTATTGGCAAAACCCTTAAAgtaagttactaccaataatt------tttatcttccgtga-acaacttgaactcagatggaatccttattctattatttctgaatt-ctag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30252507|gb|CB970058.1|CB970058
EST:     GAAACTAGCTTTGTTACTCTAGGCCAGCGTGTTCTGGCAAAACCTTTAAA                         GGTTCGTATGCATTATGGCCATCCAGATGTTTTTGATAGAGTTTTCCATAT
genomic: GAAACTAGCTTTGTTACTCTAGGCCAGCGTGTTCTGGCAAAACCTTTAAAgtaagttcat ... taatggccagGGTTCGTATGCATTATGGCCATCCAGATGTTTTTGATAGAGTTTTCCATAT