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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTCAATTCAACATTGCGCCAAGGGAATGTTACTCATCATGAATATATTCAGgtaagaccactatttgtctatttgatataattacaggaaaaaaaaaaatctctaatctaagtttacag

Basic information

species Vitis vinifera
transcript Vv06s0004g01200.t01
intron # 37
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g01200.t01 (Vitis vinifera), 5'ss of exon 37
lower sequence: GLYMA20G38860.1 (Glycine max), 5'ss of exon 42
GATTCAATTCAACATTGCGCCAAGGGAATGTTACTCATCATGAATATATTCAGgtaagaccactatttgtctatttgatataattacaggaaaaaaaaaaatctctaat-ctaagtttacag
||||||||||||| || || ||||| ||| |||| |||||||||||||||||||| ||||   |  |||| || | |||     ||||    | |||    | ||||||  ||| |||||||
GATTCAATTCAACCTTACGTCAAGGAAATATTACACATCATGAATATATTCAGgtgagac---ttgttgtttaat-gatgcctctaca----acaaatccttttctaatattaaatttacag

upper sequence: Vv06s0004g01200.t01 (Vitis vinifera), 5'ss of exon 37
lower sequence: GLYMA10G44150.1 (Glycine max), 5'ss of exon 40
GATTCAATTCAACATTGCGCCAAGGGAATGTTACTCATCATGAATATATTCAGgtaagaccactatttgtctatttgatataattacaggaaaaaaaaaaatctctaat-ctaagtttacag
||||||||||||| || || ||||| ||| |||| |||||||||||||||||||| ||||   |  |||| |||| |||     ||||    | |||    | ||||||  ||| |||||||
GATTCAATTCAACCTTACGTCAAGGAAATATTACACATCATGAATATATTCAGgtgagac---ttgttgtttatt-gatccctctaca----acaaatcgttttctaatattaaatttacag

upper sequence: Vv06s0004g01200.t01 (Vitis vinifera), 5'ss of exon 37
lower sequence: AT3G07160.1 (Arabidopsis thaliana), 5'ss of exon 39
GATTCAATTCAACATTGCGCCAAGGGAATGTTACTCATCATGAATATATTCAGgtaagaccactatttgtctatttgatataattacaggaaaaaaaaaaatctctaat--ctaagtttacag
| |||||  ||||  | || ||||||||||||||||||||||| |||||||||||  |   ||| |||  || |||   || |  | |  ||||| | | || |  | |   |  ||||||||
GTTTCAACACAACTCTACGTCAAGGGAATGTTACTCATCATGAGTATATTCAGgtccg--tactttttaactctttacaattaaaataataaaaatatatatatgcattaattctgtttacag

upper sequence: Vv06s0004g01200.t01 (Vitis vinifera), 5'ss of exon 37
lower sequence: PP1S67_234V6.1 (Physcomitrella patens), 5'ss of exon 41
GATTCAATTCAACATTGCGCCAAGGGAATGTTACTCATCATGAATATATTCAGgtaag------------------accactatttgtctatttgatataattacaggaaaaaaaaaa-----atctctaatctaagtttacag-----------------
| || ||||||||||| || | ||| ||| ||||||| ||||||||||||||||| ||                  |||  ||||| ||| ||     |  ||| |     |    ||     ||||   || ||| |||  |                  
GTTTTAATTCAACATTACGACGAGGAAATATTACTCACCATGAATATATTCAGgttagttgcgttgatgtctttataccggtatttctctcttactcttggttaaatatgtaccttaattattatctgctatttaattttgtacgcatttggggatgtcag

upper sequence: Vv06s0004g01200.t01 (Vitis vinifera), 5'ss of exon 37
lower sequence: PP1S160_88V6.1 (Physcomitrella patens), 5'ss of exon 40
GATTCAATTCAACATTGCGCCAAGGGAATGTTACTCATCATGAATATATTCAGgtaagaccactatttgt--ctatttgatataattacaggaaaaaaaaaaatctc--taatctaagtttacag----------------------------
|||||||  | ||  |  | ||||| ||||| |||||||||||||||||||||||  | |  ||    ||    | ||   |  | |   ||   |    ||||     |  | ||| || ||||                            
GATTCAACACTACTCTTAGGCAAGGCAATGTCACTCATCATGAATATATTCAGgtgtgccttcttaccgtagtaacttcgaagcagtgttggtttacttcaaattagggtggtataaattaacagaattctcaatggtgttaccccgtccgaa

upper sequence: Vv06s0004g01200.t01 (Vitis vinifera), 5'ss of exon 37
lower sequence: PP1S13_132V6.1 (Physcomitrella patens), 5'ss of exon 39
GATTCAATTCAACATTGCGCCAAGGGAATGTTACTCATCATGAATATATTCAGgtaagaccactatttgtctatttgatataattacaggaaaaaaaaaaatctctaat--ctaagtttacag------------------------------------------------
| |||||||| || || || | ||||||| |||||||||||||||||||||||||   ||   |   |       |   |    |   |  |  ||   ||||| || |   || ||||  |                                                 
GGTTCAATTCCACTTTACGACTAGGGAATATTACTCATCATGAATATATTCAGgtcgcacgcattcatacacgcatcggacgcctttggtgattaatccaatctgtagtagttatgttttgaaatgagcacttcaatttacaattgttgatttggttctgtgtattttcag

upper sequence: Vv06s0004g01200.t01 (Vitis vinifera), 5'ss of exon 37
lower sequence: PP1S145_49V6.1 (Physcomitrella patens), 5'ss of exon 38
GATTCAATTCAACATTGCGCCAAGGGAATGTTACTCATCATGAATATATTCAGgtaagaccactatttgtct-atttgatataattacaggaaaaaaaaaaatctctaat-ctaagtttacag-------------------------------------------------
|||||||||| || || || | |||||||||||| ||||||||||| |||||||| |      |  |    | |  |  | || ||  |    | |     ||||| | | |||  | |  |                                                  
GATTCAATTCTACTTTACGACTAGGGAATGTTACCCATCATGAATACATTCAGgtcacttgcatcctcacatgacctactgtacttcgattgcagatttttatctcgagtgctagatatttacttttcaatggctgttaagttgataatttttacttgtttgggaattccag