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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattagacggccatatataatttctttctttcaaaatgattgtttgttccattccattttactatttggtgcttttggtgtagGGAATTCTAGCCAAGTGAGTGATGGTGCTGGAGCTGTTCTCCTCATGAAGAGAAGTGTTGCAATGCGTAAAGGGTTACCTATTCTTGGTGTATTCAG

Basic information

species Vitis vinifera
transcript Vv05s0051g00720.t01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0051g00720.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: LOC_Os02g57260.1 (Oryza sativa), 3'ss of exon 9
------------------------------------gtattag-acggccatatataatttctttctttcaaaatg-attgtttgttccattccattttactatttggtgcttttggtgtagGGAATTCTAGCCAAGTGAGTGATGGTGCTGGAGCTGTTCTCCTCATGAAGAGAAGTGTTGCAATGCGTAAAGGGTTACCTATTCTTGGTGTATTCAG
                                     || ||   |  |||    |  ||| |   || |    |  ||||| | |    ||   ||||   ||||   |  | |  |||||| || ||||| |||||||| |||||||||||||||||||| ||||||| |||    || || |||   || ||  | |||||||||||||| |||||
gtattgcagcactcttagcttttttttctgctgacactactattgcaaccaggctttgtttgtccattgcttgttacattgtgtatgtgttttttttttttaatttaacgaatcta-tgtagGCAACTCTAGTCAAGTGAGCGATGGTGCTGGAGCTGTTCTTCTCATGAGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAG

upper sequence: Vv05s0051g00720.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GRMZM2G152442_T01 (Zea mays), 3'ss of exon 2
----------------------------------------------------------------gtattagacggccatata-taatttctttctttcaaaatgattgtttgttccattccattttactatttggtg-------cttttggtgtagGGAATTCTAGCCAAGTGAGTGATGGTGCTGGAGCTGTTCTCCTCATGAAGAGAAGTGTTGCAATGCGTAAAGGGTTACCTATTCTTGGTGTATTCAG---
                                                                   | |  |     | |  | |      | || ||    ||||  |   ||  |      |   ||| || |        |     ||||||| ||||| || ||||||||||||||||||||||||||||| |||||||| |||  ||| ||  |    |||||| | || ||||||||||| |||||   
gtgagttcctcattaagcatcaactgtatgaattaattatcttggattttctagttaatataacaactaaagcttttttctggtgaccctccttttgcagctagatttctctctctctaatgaatcgatatatgataaaccaatcaaactgtgtagGCAATTCCAGTCAAGTGAGTGATGGTGCTGGAGCTGTTCTTCTCATGAAAAGATCTGTGGCTCTTAAGAAAGGGCTGCCCATTCTTGGTGTTTTCAGGTT

upper sequence: Vv05s0051g00720.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GRMZM5G848768_T02 (Zea mays), 3'ss of exon 9
gtattagacggccatatataatttctttctttcaaaatgattgtttgttccattccattttactatttggtgcttttg----gtgtagGGAATTCTAGCCAAGTGAGTGATGGTGCTGGAGCTGTTCTCCTCATGAAGAGAAGTGTTGCAATGCGTAAAGGGTTACCTATTCTTGGTGTATTCAG
|||||         |   | |      | || ||    |||| ||| |    |   |  |||     |    |  |      ||||||| ||||| || ||||||||||||||||||||||||||||| |||||||| |||  ||| ||  ||   |||||| | || ||||||||||| |||||
gtattgcttttttctg-gtgaccctccttttgcagctagattttttctctgctgaaacgttatctgataaaccaatcaaactgtgtagGCAATTCCAGTCAAGTGAGTGATGGTGCTGGAGCTGTTCTTCTCATGAAAAGATCTGTGGCTCTGAAGAAAGGGCTGCCCATTCTTGGTGTTTTCAG

upper sequence: Vv05s0051g00720.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GRMZM2G152442_T02 (Zea mays), 3'ss of exon 2
---------------------------------------gtattagacggccatata-taatttctttctttcaaaatgattgtttgttccattccattttactatttggtgcttttg-------gtgtagGGAATTCTAGCCAAGTGAGTGATGGTGCTGGAGCTGTTCTCCTCATGAAGAGAAGTGTTGCAATGCGTAAAGGGTTACCTATTCTTGGTGTATTCAG
                                          | |  |     | |  | |      | || ||    ||||  |   ||  |      |   ||| || |              ||||||| ||||| || ||||||||||||||||||||||||||||| |||||||| |||  ||| ||  |    |||||| | || ||||||||||| |||||
gtatgaattaattatcttggattttctagttaatataacaactaaagcttttttctggtgaccctccttttgcagctagatttctctctctctaatgaatcgatatatgataaaccaatcaaactgtgtagGCAATTCCAGTCAAGTGAGTGATGGTGCTGGAGCTGTTCTTCTCATGAAAAGATCTGTGGCTCTTAAGAAAGGGCTGCCCATTCTTGGTGTTTTCAG

upper sequence: Vv05s0051g00720.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GRMZM2G469466_T01 (Zea mays), 3'ss of exon 3
----------------------------------------------------------gtattagacggccatatataatt-tctttctttcaaaatgattgtttgttccattccattttactatttggtgcttttggtgtagGGAATTCTAGCCAAGTGAGTGATGGTGCTGGAGCTGTTCTCCTCATGAAGAGAAGTGTTGCAATGCGTAAAGGGTTACCTATTCTTGGTGTATTCAG
                                                              |       ||  || | || ||| ||| ||    |   | | || |  ||     | |  ||       |     ||||||| ||||| || ||||||||||| |||||||||| |||| | |||||||| |||  | | ||  ||   |||||| | || ||||||||||| |||||
gtgagttcctcattaagcatcgactatatgaattaacaactaaagcttttttctggtgaccctcctttttcagctagatttctctctctctctctctctctctctgctgaatcgttatctgataaaccaatcaaactgtgtagGCAATTCCAGTCAAGTGAGTGAAGGTGCTGGAGTTGTTGTTCTCATGAAAAGATCTATGGCTCTGAAGAAAGGGCTGCCCATTCTTGGTGTTTTCAG

upper sequence: Vv05s0051g00720.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA20G18980.1 (Glycine max), 3'ss of exon 9
gtattagacggccatatataatttctttctttcaaaatgattgt--ttgttccattccattttactatttggtgcttttggtgtagGGAATTCTAGCCAAGTGAGTGATGGTGCTGGAGCTGTTCTCCTCATGAAGAGAAGTGTTGCAATGCGTAAAGGGTTACCTATTCTTGGTGTATTCAG
|||| |||     | |      ||| ||   || ||    || |  ||| |  |     ||| |  || || ||| | || | |||| |||||||| || |||||||||||||||| ||||||||| || ||||| |||||||||||  |||  || ||| |||| |||||||||||||||||
gtataagatcataaaaaccttgttcatttcctctaatcctttctagttgatgtaccaagtttaatcatatgatgcctgtgctttagGTAATTCTAGTCAGGTGAGTGATGGTGCTGCAGCTGTTCTGCTGATGAAAAGAAGTGTTGCGTTGCAAAAGGGGCTACCCATTCTTGGTGTATTCAG

upper sequence: Vv05s0051g00720.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA10G24590.3 (Glycine max), 3'ss of exon 9
gtattagacggccatatataatttctttctttcaaaatgattgt--ttgttccattccattttactatttggtgcttttggtgtagGGAATTCTAGCCAAGTGAGTGATGGTGCTGGAGCTGTTCTCCTCATGAAGAGAAGTGTTGCAATGCGTAAAGGGTTACCTATTCTTGGTGTATTCAG
|||| |||     | |      ||| ||   |||||    || |  ||| |  | |   |||||  || || ||| | || | |||| ||||||||||| ||||  ||||| |||  ||||||||| || ||||| |||||||||||| |||  || ||| |||| |||||||||||||||||
gtataagatcataaaaaccttgttcatttcctcaaatcctttctagttgatgtactaagttttatcatatgatgcatgtgctttagGTAATTCTAGCCAGGTGACCGATGGGGCTTCAGCTGTTCTGCTGATGAAAAGAAGTGTTGCATTGCAAAAGGGGCTACCCATTCTTGGTGTATTCAG

upper sequence: Vv05s0051g00720.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: AT2G33150.1 (Arabidopsis thaliana), 3'ss of exon 9
-----------gtattagacggccatatataatttctttctttcaaaatgattgtttgttccattccattttactatttggtgcttttggtgtagGGAATTCTAGCCAAGTGAGTGATGGTGCTGGAGCTGTTCTCCTCATGAAGAGAAGTGTTGCAATGCGTAAAGGGTTACCTATTCTTGGTGTATTCAG
           | || |   |      |||     |     |||  | | ||      ||  | ||||||     ||||| |   |       ||| ||||| |||||||| ||||||||||| ||||| |||||||| ||||||||||||||||||||||  |||||  | ||  ||||||||||||||||
gtacttttcccgaatcaattgtttcattatggaaaccacagttcttatt-atcacaattttaaatccattgcttcatttgttctgtcgcaaacagGAAATTCCAGCCAAGTAAGTGATGGTGCAGGAGCGGTTCTCCTAATGAAGAGAAGTGTTGCAATGCAAAAAGGACTTCCCGTTCTTGGTGTATTCAG

upper sequence: Vv05s0051g00720.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: AT1G04710.1 (Arabidopsis thaliana), 3'ss of exon 9
gtattagacggccatatataatttctttctttc-----aaaatgattgtttgttccattccatttt---actatttggtgcttttg----gtgtagGGAATTCTAGCCAAGTGAGTGATGGTGCTGGAGCTGTTCTCCTCATGAAGAGAAGTGTTGCAATGCGTAAAGGGTTACCTATTCTTGGTGTATTCAG
||| |   |  ||| || |||||  |   ||||     |||||| ||||||| |||||    ||     |    ||| | | ||||        |||||||||||||||| | ||||| |||||||||||||||||||| |||| ||||| ||| |||||||  |||||  | || |||||||||||||||||
gtactttcc--ccagat-taattggtcattttcagagaaaaatgtttgtttgatccatctttttcccaaatcccttgtttcctttgtgtcaaacagGGAATTCTAGCCAATTAAGTGACGGTGCTGGAGCTGTTCTCCTTATGAGGAGAAATGTCGCAATGCAGAAAGGCCTTCCCATTCTTGGTGTATTCAG

upper sequence: Vv05s0051g00720.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: EFJ24355 (Selaginella moellendorffii), 3'ss of exon 9
gtattagacggccatatataatttctttctttcaaaatgattgtttgttccattccattttactatttggtgcttttggtgtagGGAATTCTAGCCAAGTGAGTGATGGTGCTGGAGCTGTTCTCCTCATGAAGAGAAGTGTTGCAATGCGTAAAGGGTTACCTATTCTTGGTGTATTCAG
                              | | ||   | ||  ||  |   | ||| |    ||    | || ||  |  ||| || ||||||||||| ||||||||||| || |||||||| || ||||| |||||||| || || |    |||  |||| ||||| || || |||||
-----------------------------gtacgaacgaagtgcatgagc---ttcatgtcttcatg-aattctgttctttcagGAAACTCTAGCCAAGTCAGTGATGGTGCGGGTGCTGTTCTACTTATGAAAAGAAGTGTGGCTATTCAACGAGGACTACCAATTCTCGGGGTGTTCAG

upper sequence: Vv05s0051g00720.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: EFJ35624 (Selaginella moellendorffii), 3'ss of exon 9
gtattagacggccatatataatttctttctttcaaaatgattgtttgttccattccattttactatttggtgcttttggtgtagGGAATTCTAGCCAAGTGAGTGATGGTGCTGGAGCTGTTCTCCTCATGAAGAGAAGTGTTGCAATGCGTAAAGGGTTACCTATTCTTGGTGTATTCAG
                              | | | |  | ||  ||  |   | ||| |    ||    | || ||  |  ||| || ||||||||||| ||||||||||| || |||||||| || ||||| |||||||| || || |    |||  |||| ||||| || || |||||
-----------------------------gtacgagagaagtgcatgagc---ttcatgtcttcatg-aattctgttctttcagGAAACTCTAGCCAAGTCAGTGATGGTGCGGGTGCTGTTCTACTTATGAAAAGAAGTGTGGCTATTCAACGAGGACTACCAATTCTCGGGGTGTTCAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110718623|gb|EE095664.1|EE095664
EST:     TCTTGCAAAGCTGAAGCCTGTATTTAAGAAAAATGGGACAACCACAGCAG                         GGAATTCTAGCCAAGTGAGTGACGGTGCTGGAGCTGTTCTCCTCATGAAGA
genomic: TCTTGCAAAGCTGAAGCCTGTATTTAAGAAAAATGGGACAACCACAGCAGgtattagacg ... tttggtgtagGGAATTCTAGCCAAGTGAGTGATGGTGCTGGAGCTGTTCTCCTCATGAAGA
EST: gi|37189925|gb|CF609274.1|CF609274
EST:     TCTTGCAAAGCTGAAGCCTGTATTTAAGAAAAATGGGACAACCACAGCAG                         GGAATTCTAGCCAAGTGAGTGATGGTGCTGGAGCTGTTCTCCTCATGAAGA
genomic: TCTTGCAAAGCTGAAGCCTGTATTTAAGAAAAATGGGACAACCACAGCAGgtattagacg ... tttggtgtagGGAATTCTAGCCAAGTGAGTGATGGTGCTGGAGCTGTTCTCCTCATGAAGA
EST: gi|110718621|gb|EE095662.1|EE095662
EST:     TCTTGCAAAGCTGAAGCCTGTATTTAAGAAAAATGGGACAACCACAGCAG                         GGAATTCTAGCCAAGTGAGTGACGGTGCTGGAGCTGTTCTCCTCATGAAGA
genomic: TCTTGCAAAGCTGAAGCCTGTATTTAAGAAAAATGGGACAACCACAGCAGgtattagacg ... tttggtgtagGGAATTCTAGCCAAGTGAGTGATGGTGCTGGAGCTGTTCTCCTCATGAAGA
EST: gi|161709217|gb|FC060523.1|FC060523
EST:     TCTTGCAAAGCTGAAGCCTGTATTTAAGACAAATGGGACAACCACAGCAG                         GGAATTCTAGCCAAGTGAGTGACGGTGCTGGAGCT
genomic: TCTTGCAAAGCTGAAGCCTGTATTTAAGAAAAATGGGACAACCACAGCAGgtattagacg ... tttggtgtagGGAATTCTAGCCAAGTGAGTGATGGTGCTGGAGCT
EST: gi|27582620|gb|CB005315.1|CB005315
EST:     TCTTGCAAAGCTGAAGCCTGTATTTAAGAAAAATGGGACAACCACAGCAG                         GGAATTCTAGCCAAGTGAGTGATGGTGCTGGAGCTGTTCTCCTCATGAAGA
genomic: TCTTGCAAAGCTGAAGCCTGTATTTAAGAAAAATGGGACAACCACAGCAGgtattagacg ... tttggtgtagGGAATTCTAGCCAAGTGAGTGATGGTGCTGGAGCTGTTCTCCTCATGAAGA
EST: gi|30324476|gb|CD007738.1|CD007738
EST:     TCTTGCAAAGCTGAAGCCTGTATTTAAGAAAAATGGGACAACCACAGCAG                         GGAATTCTAGCCAAGTGAGTGACGGTGCTGGAGCTGTTCTCCTCATGAAGA
genomic: TCTTGCAAAGCTGAAGCCTGTATTTAAGAAAAATGGGACAACCACAGCAGgtattagacg ... tttggtgtagGGAATTCTAGCCAAGTGAGTGATGGTGCTGGAGCTGTTCTCCTCATGAAGA
EST: gi|110370828|gb|EC934376.1|EC934376
EST:     TCTTGCAAAGCTGAAGCCTGTATTTAAGAAAAATGGGACAACCACAGCAG                         GGAATTCTAGCCAAGTGAGTGACGGTGCTGGAGCTGTTCTCCTCATGAAGA
genomic: TCTTGCAAAGCTGAAGCCTGTATTTAAGAAAAATGGGACAACCACAGCAGgtattagacg ... tttggtgtagGGAATTCTAGCCAAGTGAGTGATGGTGCTGGAGCTGTTCTCCTCATGAAGA
EST: gi|34548699|gb|CF516931.1|CF516931
EST:     TCTTGCAAAGCTGAAGCCTGTATTTAAGAAAAATGGGACAACCACAGCAG                         GGAATTCTAGCCAAGTGAGTGACGGTGCTGGAGCTGTTCCCCTCATGAAGA
genomic: TCTTGCAAAGCTGAAGCCTGTATTTAAGAAAAATGGGACAACCACAGCAGgtattagacg ... tttggtgtagGGAATTCTAGCCAAGTGAGTGATGGTGCTGGAGCTGTTCTCCTCATGAAGA
EST: gi|352781999|gb|FQ469297.1|FQ469297
EST:     TCTTGCAAAGCTGAAGCCTGTATTTAAGAAAAATGGGACAACCACAGCAG                         GGAATTCTAGCCAAGTGAGTGATGGTGCTGGAGCTGTTCTCCTCATGAAGA
genomic: TCTTGCAAAGCTGAAGCCTGTATTTAAGAAAAATGGGACAACCACAGCAGgtattagacg ... tttggtgtagGGAATTCTAGCCAAGTGAGTGATGGTGCTGGAGCTGTTCTCCTCATGAAGA
EST: gi|27585593|gb|CB008288.1|CB008288
EST:     TCTTGCAAAGCTGAAGCCTGTATTTAAGAAAAATGGGACAACCACAGCAG                         GGAATTCTAGCCAAGTGAGTGATGGTGCTGGAGCTGTTCTCCTCATGAAGA
genomic: TCTTGCAAAGCTGAAGCCTGTATTTAAGAAAAATGGGACAACCACAGCAGgtattagacg ... tttggtgtagGGAATTCTAGCCAAGTGAGTGATGGTGCTGGAGCTGTTCTCCTCATGAAGA
EST: gi|161719599|gb|FC067979.1|FC067979
EST:     TCTTGCAAAGCTGAAGCCTGTATTTAAGAAAAATGGGACAACCACAGCAG                         GGAATTCTAGCCAAGTGAGTGACGGTGCTGGAGCTGTTCTCCTCATGAAGA
genomic: TCTTGCAAAGCTGAAGCCTGTATTTAAGAAAAATGGGACAACCACAGCAGgtattagacg ... tttggtgtagGGAATTCTAGCCAAGTGAGTGATGGTGCTGGAGCTGTTCTCCTCATGAAGA
EST: gi|110726811|gb|EE102917.1|EE102917
EST:     TCTTGCAAAGCTGAAGCCTGTATTTAAGAAAAATGGGACAACCACAGCAG                         GGAATTCTAGCCAAGTGAGTGACGGTGCTGGAGCTGTTCTCCTCATGAAGA
genomic: TCTTGCAAAGCTGAAGCCTGTATTTAAGAAAAATGGGACAACCACAGCAGgtattagacg ... tttggtgtagGGAATTCTAGCCAAGTGAGTGATGGTGCTGGAGCTGTTCTCCTCATGAAGA
EST: gi|110718357|gb|EE095094.1|EE095094
EST:     TCTTGCAAAGCTGAAGCCTGTATTTAAGAAAAATGGGACAACCACAGCAG                         GGAATTCTAGCCAAGTGAGTGACGGTGCTGGAGCTGTTCTCCTCATGAAGA
genomic: TCTTGCAAAGCTGAAGCCTGTATTTAAGAAAAATGGGACAACCACAGCAGgtattagacg ... tttggtgtagGGAATTCTAGCCAAGTGAGTGATGGTGCTGGAGCTGTTCTCCTCATGAAGA
EST: gi|30325609|gb|CD008871.1|CD008871
EST:     TCTTGCAAAGCTGAAGCCTGTATTTAAGAAAAATGGGACAACCACAGCAG                         GGAATTCTAGCCAAGTGAGTGACGGTGCTGGAGCTGTTCTCCTCATGAAGA
genomic: TCTTGCAAAGCTGAAGCCTGTATTTAAGAAAAATGGGACAACCACAGCAGgtattagacg ... tttggtgtagGGAATTCTAGCCAAGTGAGTGATGGTGCTGGAGCTGTTCTCCTCATGAAGA
EST: gi|110383687|gb|EC948074.1|EC948074
EST:     TGCAAAGCTGAAGCCTGTATTTAAGAAAAATGGGACAACCACAGCAG                         GGAATTCTAGCCAAGTGAGTGATGGTGCTGGAGCTGTTCTCCTCATGAAGA
genomic: TGCAAAGCTGAAGCCTGTATTTAAGAAAAATGGGACAACCACAGCAGgtattagacg ... tttggtgtagGGAATTCTAGCCAAGTGAGTGATGGTGCTGGAGCTGTTCTCCTCATGAAGA
EST: gi|32270335|gb|CD719494.1|CD719494
EST:     TCTTGCAAAGCTGAAGCCTGTATTTAAGAAAAATGGGACAACCACAGCAG                         GGAATTCTAGCCAAGTGAGTGACGGTGCTGGAGCTGTTCTCCTCATGAAGA
genomic: TCTTGCAAAGCTGAAGCCTGTATTTAAGAAAAATGGGACAACCACAGCAGgtattagacg ... tttggtgtagGGAATTCTAGCCAAGTGAGTGATGGTGCTGGAGCTGTTCTCCTCATGAAGA
EST: gi|71859322|gb|DT008377.1|DT008377
EST:     TCTTGCAAAGCTGAAGCCTGTATTTAAGAAAAATGGGACAACCACAGCAG                         GGAATTCTAGCCAAGTGAGTGATGGTGCTGGAGCTGTTCTCCTCATGAAGA
genomic: TCTTGCAAAGCTGAAGCCTGTATTTAAGAAAAATGGGACAACCACAGCAGgtattagacg ... tttggtgtagGGAATTCTAGCCAAGTGAGTGATGGTGCTGGAGCTGTTCTCCTCATGAAGA
EST: gi|32267658|gb|CD716621.1|CD716621
EST:     TCTTGCAAAGCTGAAGCCTGTATTTAAGAAAAATGGGACAACCACAGCAG                         GGAATTCTAGCCAAGTGAGTGACGGTGCTGGAGCTGTTCTCCTCATGAAGA
genomic: TCTTGCAAAGCTGAAGCCTGTATTTAAGAAAAATGGGACAACCACAGCAGgtattagacg ... tttggtgtagGGAATTCTAGCCAAGTGAGTGATGGTGCTGGAGCTGTTCTCCTCATGAAGA
EST: gi|30302300|gb|CB979094.1|CB979094
EST:     TCTTGCAAAGCTGAAGCCTGTATTTAAGAAAAATGGGACAACCACAGCAG                         GGAATTCTAGCCAAGTGAGTGACGGTGCTGGAGCTGTTCTCCTCATGAAGA
genomic: TCTTGCAAAGCTGAAGCCTGTATTTAAGAAAAATGGGACAACCACAGCAGgtattagacg ... tttggtgtagGGAATTCTAGCCAAGTGAGTGATGGTGCTGGAGCTGTTCTCCTCATGAAGA
EST: gi|110719453|gb|EE094592.1|EE094592
EST:     TCTTGCAAAGCTGAAGCCTGTATTTAAGAAAAATGGGACAACCACAGCAG                         GGAATTCTAGCCAAGTGAGTGACGGTGCTGGAGCTGTTCTCCTCATGAAGA
genomic: TCTTGCAAAGCTGAAGCCTGTATTTAAGAAAAATGGGACAACCACAGCAGgtattagacg ... tttggtgtagGGAATTCTAGCCAAGTGAGTGATGGTGCTGGAGCTGTTCTCCTCATGAAGA
EST: gi|34548784|gb|CF517016.1|CF517016
EST:     TCTTGCAAAGCTGAAGCCTGTATTTAAGAAAAATGGGACAACCACAGCAG                         GGAATTCTAGCCAAGTGAGTGACGGTGCTGGAGCTGTTCCCCTCATGAAGA
genomic: TCTTGCAAAGCTGAAGCCTGTATTTAAGAAAAATGGGACAACCACAGCAGgtattagacg ... tttggtgtagGGAATTCTAGCCAAGTGAGTGATGGTGCTGGAGCTGTTCTCCTCATGAAGA
EST: gi|110398143|gb|EC964291.1|EC964291
EST:     TCTTGCAAAGCTGAAGCCTGTATTTAAGAAAAATGGGACAACCACAGCAG                         GGAATTCTAGCCAAGTGAGTGATGGTGCTGGAGCTGTTCTCCTCATGAAGA
genomic: TCTTGCAAAGCTGAAGCCTGTATTTAAGAAAAATGGGACAACCACAGCAGgtattagacg ... tttggtgtagGGAATTCTAGCCAAGTGAGTGATGGTGCTGGAGCTGTTCTCCTCATGAAGA
EST: gi|110388743|gb|EC953525.1|EC953525
EST:     TCTTGCAAAGCTGAAGCCTGTATTTAAGAAAAATGGGACAACCACAGCAG                         GGAATTCTAGCCAAGTGAGTGACGGTGCTGGAGCTGTTCTCCTCATGAAGA
genomic: TCTTGCAAAGCTGAAGCCTGTATTTAAGAAAAATGGGACAACCACAGCAGgtattagacg ... tttggtgtagGGAATTCTAGCCAAGTGAGTGATGGTGCTGGAGCTGTTCTCCTCATGAAGA
EST: gi|33407958|gb|CF213585.1|CF213585
EST:     TCTTGCAAAGCTGAAGCCTGTATTTAAGAAAAATGGGACAACCACAGCAG                         GGAATTCTAGCCAAGTGAGTGACGGTGCTGGAGCTGTTCTCCTCATGAAGA
genomic: TCTTGCAAAGCTGAAGCCTGTATTTAAGAAAAATGGGACAACCACAGCAGgtattagacg ... tttggtgtagGGAATTCTAGCCAAGTGAGTGATGGTGCTGGAGCTGTTCTCCTCATGAAGA
EST: gi|30323063|gb|CD006325.1|CD006325
EST:     TCTTGCAAAGCTGAAGCCTGTATTTAAGAAAAATGGGACAACCACAGCAG                         GGAATTCTAGCCAAGTGAGTGACGGTGCTGGAGCTG
genomic: TCTTGCAAAGCTGAAGCCTGTATTTAAGAAAAATGGGACAACCACAGCAGgtattagacg ... tttggtgtagGGAATTCTAGCCAAGTGAGTGATGGTGCTGGAGCTG
EST: gi|110417251|gb|EC983290.1|EC983290
EST:     TCTTGCAAAGCTGAAGCCTGTATTTAAGAAAAATGGGACAACCACAGCAG                         GGAATTCTAGCCAAGTGAGTGACGGTGCTGGAGCTGTTCTCCTCATGAAGA
genomic: TCTTGCAAAGCTGAAGCCTGTATTTAAGAAAAATGGGACAACCACAGCAGgtattagacg ... tttggtgtagGGAATTCTAGCCAAGTGAGTGATGGTGCTGGAGCTGTTCTCCTCATGAAGA
EST: gi|110379190|gb|EC944369.1|EC944369
EST:     TCTTGCAAAGCTGAAGCCTGTATTTAAGAAAAATGGGACAACCACAGCAG                         GGAATTCTAGCCAAGTGAGTGACGGTGCTGGAGCTGTTCTCCTCATGAAGA
genomic: TCTTGCAAAGCTGAAGCCTGTATTTAAGAAAAATGGGACAACCACAGCAGgtattagacg ... tttggtgtagGGAATTCTAGCCAAGTGAGTGATGGTGCTGGAGCTGTTCTCCTCATGAAGA
EST: gi|156739147|gb|EV243268.1|EV243268
EST:     TCTTGCAAAGCTGAAGCCTGTATTTAAGAAAAATGGGACA-CCACAGCAG                         GGAATTCTAGCCAAGTGAGTGACGGTGCTGGAGCTGTTTCTCC-CATGAAG
genomic: TCTTGCAAAGCTGAAGCCTGTATTTAAGAAAAATGGGACAACCACAGCAGgtattagacg ... tttggtgtagGGAATTCTAGCCAAGTGAGTGATGGTGCTGGAGCTGTT-CTCCTCATGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcaaaatgattgtttgttccattccattttactatttggtgcttttggtgtagGGAATTCTAGCCAAGTGAGTGATGGTGCTGGAGCTGTTCTCCTCATGAAGAGAAGTGTTGCAATGCGTAAAGGGTTACCTATTCTTGGTGTATTCAG
                                         tgctttt  CT-rich tract
                           attttactattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtattagacggccatatataatttctttctttcaaaatgattgtttgttccattccattttactatttggtgcttttggtgtagGGAATTCTAGCCAAGTGAGTGATGGTGCTGGAGCTGTTCTCCTCATGAAGAGAAGTGTTGCAATGCGTAAAGGGTTACCTATTCTTGGTGTATTCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT