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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACTTCAGAAAATGTTGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACCAGGCTGCAgtgagttgaatgaattatcagtggagtttttgccttttggttcaatgttgttattcttctgattacatttatgttgtcag

Basic information

species Vitis vinifera
transcript Vv05s0051g00720.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0051g00720.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os02g57260.1 (Oryza sativa), 5'ss of exon 7
ATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACTTCAGAAAATGTTGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACCAGGCTGCAgtgagttgaatgaat------tatcagtggagtttttgccttttggttcaatgttgttattcttctgattacatttatgttgtcag---
| |   | |||| || ||||||||| | |||||||| || || || ||||||||||| || || | |||||||||||| || |||||||| |||||||| ||||||    || ||      | |  |||   ||| | ||   || |||  | |  | |     |||   | |||| |||| | |    
AGTCCAGAAAGCACAGGATTGTCTTTTGCCCATGGGGATAACGTCCGAAAATGTTGCGCACCGATATGGTGTAACAAGACAAGAGCAGGATCAGGCTGCTgtgagtcacttgcatacattctgtttgtgttttttcttcccactgcttccttttactcaaaacactgtcgaaatttttgtttttaacag

upper sequence: Vv05s0051g00720.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM5G848768_T02 (Zea mays), 5'ss of exon 7
ATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACTTCAGAAAATGTTGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACCAGGCTGCAgtgagttg--aatgaattatcagtggagtt--tttgccttttggttcaatgttgttattcttctgattaca--tttatgttgtcag
|||   | |||| || ||||||||||| |||||||| |||||||| ||||||||||| ||||| | ||||||||| ||||| ||||| || ||||| || |||||||    || ||  |||    |  |   ||     | |||     |   |||| | |    | || |  ||| | |||||||
ATTCCAGAAAGCACAGGATTGTCTTCTGCCCATGGGAATTACTTCTGAAAATGTTGCCCATCGATATGGTGTAACCAGGCAAGAGCAAGATCAGGCCGCCgtgagttcctcattaagcatcgactgtatgaattaattatctggggttttccggttaatataacaactaaagcttttttttgtcag

upper sequence: Vv05s0051g00720.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G469466_T02 (Zea mays), 5'ss of exon 3
ATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACTTCAGAAAATGTTGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACCAGGCTGCAgtgagttgaatgaattatcagtggagtttttgccttttggttcaatgttgttattcttctgattacatttatgttgtcag------------------------------------------------------------------
||||  | |||| || ||||||||||| |||||||| |||||||| ||||||||||| ||||| | ||||||||| ||||| ||||| || ||||| || |||||||      ||||    | || | | ||  ||       || | | || ||||  |||      || |   |  ||                                                                  
ATTTCAGAAAGCACATGATTGTCTTCTGCCCATGGGAATTACTTCTGAAAATGTTGCCCATCGATATGGTGTAACCAGGCAAGAGCAAGATCAGGCCGCCgtgagttcctc--attaagcatcgactatatgaattaacaactaaagctttt-ttctggtgaccctcctttttcagctagatttctctctctctctctctctctctctgctgaatcgttatctgataaaccaatcaaactgtgtag

upper sequence: Vv05s0051g00720.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G152442_T01 (Zea mays), 5'ss of exon 2
ATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACTTCAGAAAATGTTGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACCAGGCTGCAgtgagttg--aatgaattatcag-----tggagtttttgccttttggttcaatgttgttattcttctgattacatttatgttgtcag---------------------------------------------------------------------
|||   | |||| || ||||||||||| |||||||| ||||||||  ||||| |||| ||||| | ||||||||| ||||| ||||| || ||| | || |||||||    || ||  ||||      || | |  ||  |||    ||    |||  |||       |   | ||| | | || |                                                                      
ATTCCAGAAAGCACATGATTGTCTTCTGCCCATGGGAATTACTTCTAAAAATATTGCCCATCGATATGGTGTAACCAGGCAAGAGCAAGATCAGACCGCCgtgagttcctcattaagcatcaactgtatgaattaattatcttggattttctagttaatataacaactaaagcttttttctggtgaccctccttttgcagctagatttctctctctctaatgaatcgatatatgataaaccaatcaaactgtgtag

upper sequence: Vv05s0051g00720.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA10G24590.3 (Glycine max), 5'ss of exon 7
ATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACTTCAGAAAATGTTGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACCAGGCTGCAgtgagttgaatgaatt------atcagtggagtttttgccttttggttcaatgttgttattcttctgattacatttatg-ttgtcag---------------
 ||||  ||||| ||| | || ||||| || ||||| ||||| || |||||||||||||| || ||||| ||  ||||| |||| || |||||||||||||| ||||| ||  ||       || | || |   |||   | |   | ||| ||| | |  ||   || |  |   |   | || ||               
GTTTGAACAAGCACAAAACTGCCTTCTTCCTATGGGAATTACCTCTGAAAATGTTGCACAGCGCTTTGGGGTTTCAAGGAAGGAACAAGACCAGGCTGCAgtaagttggatatatgttttaaattaatgcaacattttgttct--atccaaggttatcaaactcgagagtttacgcagactcgtgagagttccagagactcg

upper sequence: Vv05s0051g00720.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA20G18980.1 (Glycine max), 5'ss of exon 7
ATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACTTCAGAAAATGTTGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACCAGGCTGCAgtgagttgaatgaattatcagtggagtttttgccttttggttcaatgt---tgttatt--cttctgattacattt--------atgttgtcag
 ||||  ||||| ||| | || ||||| || ||||| ||||| || |||||||||||||| || ||||| ||  ||||| |||| || |||||||| ||||| ||||  ||  ||  |         ||   | ||||| |  | | |   |||||    ||  | |    || |        ||||||  ||
GTTTGAACAAGCACAAAACTGCCTTCTTCCTATGGGAATTACCTCCGAAAATGTTGCACAGCGCTTTGGGGTTTCAAGGAAGGAACAAGACCAGGCCGCAgtaagttagatatatgttttaaattaattcaacattttgttctattttatatgttaacaactcttaaccgaatcttcttaataatgttgatag

upper sequence: Vv05s0051g00720.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT2G33150.1 (Arabidopsis thaliana), 5'ss of exon 7
ATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACTTCAGAAAATGTTGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACCAGGCTGCAgtgagttgaatgaa--ttatcagtggagtt----tttgccttttggttcaatgttgttattcttctga---ttacatttatgttgtcag
 ||||  ||||| ||  |||||||||| || |||||| |||| ||||||||||| ||||| || ||||||||  ||||||||||||| || || ||||| || ||   | ||||  || |||||   |||    |||   |      | | | |  |   | | || |    |  | | || |||  ||
GTTTGCACAAGCGCAGAATTGTCTTCTTCCTATGGGTGTTACGTCAGAAAATGTAGCACAACGCTTTGGTGTCTCAAGGCAGGAGCAAGATCAAGCTGCTgtaagggaactgaactttttcagtatggttgtattttaaataacctataactttgatcgctatgctaagctatggagtcatattgctag

upper sequence: Vv05s0051g00720.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT1G04710.1 (Arabidopsis thaliana), 5'ss of exon 7
ATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACTTCAGAAAATGTTGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACCAGGCTGCAgtgagttgaatgaattatcagtggagtttttgccttttggttcaatgttgttattcttctgattacatttatgttgtcag--------
 ||||  ||||| ||  |||| ||||| || ||||||||||||||||||||||| ||||| || |||  |||  ||||| |||||||||| || ||||| || |||  ||| |    ||     |||| |      |   ||| || |||   | | ||    |   |||||   ||||         
GTTTGAACAAGCTCACAATTGCCTTCTTCCAATGGGTATTACTTCAGAAAATGTAGCACACCGGTTTAATGTTTCAAGGGAGGAGCAGGATCAAGCTGCTgtaagtcaaataagcattctt---agttctaatgcatgtattcgatattgccctccatcc--cttagtttatcgagtcaaatgtgtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34549360|gb|CF517592.1|CF517592
EST:     ATGTTGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACCAGGCTGCA                         GTTGAGTCTCATAAGCGGGCTGCTGCTGCAACTGCTACTGGGAAATTTAAG
genomic: ATGTTGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACCAGGCTGCAgtgagttgaa ... atgttgtcagGTTGAGTCTCATAAGCGGGCTGCTGCTGCAACTGCTACTGGGAAATTTAAG
EST: gi|110718623|gb|EE095664.1|EE095664
EST:     ATGTCGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACCAGGCTGCA                         GTTGAGTCTCATAAGCGGGCTGCTGCTGCAACTGCTACTGGGAAATTTAAG
genomic: ATGTTGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACCAGGCTGCAgtgagttgaa ... atgttgtcagGTTGAGTCTCATAAGCGGGCTGCTGCTGCAACTGCTACTGGGAAATTTAAG
EST: gi|27585487|gb|CB008182.1|CB008182
EST:     ATGTTGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACCAGGCTGCA                         GTTGAGTCTCATAAGCGGGCTGCTGCTGCAACTGCTACT
genomic: ATGTTGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACCAGGCTGCAgtgagttgaa ... atgttgtcagGTTGAGTCTCATAAGCGGGCTGCTGCTGCAACTGCTACT
EST: gi|110711203|gb|EE087460.1|EE087460
EST:     ATGTCGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACCAGGCTGCA                         GTTGAGTCTCATAAGCGGGCTGCTGCTGCAACTGCTACTGGGGAATTTAAG
genomic: ATGTTGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACCAGGCTGCAgtgagttgaa ... atgttgtcagGTTGAGTCTCATAAGCGGGCTGCTGCTGCAACTGCTACTGGGAAATTTAAG
EST: gi|110718621|gb|EE095662.1|EE095662
EST:     ATGTCGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACCAGGCTGCA                         GTTGAGTCTCATAAGCGGGCTGCTGCTGCAACTGCTACTGGGAAATTTAAG
genomic: ATGTTGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACCAGGCTGCAgtgagttgaa ... atgttgtcagGTTGAGTCTCATAAGCGGGCTGCTGCTGCAACTGCTACTGGGAAATTTAAG
EST: gi|71860333|gb|DT009388.1|DT009388
EST:     ATGTCGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACCAGGCTGCA                         GTTGAGTCTCATAAGCGGGCTGCTGCTGCAACTGCTACTGGGAAATTTAAG
genomic: ATGTTGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACCAGGCTGCAgtgagttgaa ... atgttgtcagGTTGAGTCTCATAAGCGGGCTGCTGCTGCAACTGCTACTGGGAAATTTAAG
EST: gi|161709217|gb|FC060523.1|FC060523
EST:     ATGTCGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACCAGGCTGCA                         GTTGAGTCTCATAAGCGGGCTGCTGCTGCAACTGCTACTGGGAAATTTAAG
genomic: ATGTTGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACCAGGCTGCAgtgagttgaa ... atgttgtcagGTTGAGTCTCATAAGCGGGCTGCTGCTGCAACTGCTACTGGGAAATTTAAG
EST: gi|27582620|gb|CB005315.1|CB005315
EST:     ATGTTGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACCAGGCTGCA                         GTTGAGTCTCATAAGCGGGCTGCTGCTGCAACTGCTACTGGGAAATTTAAG
genomic: ATGTTGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACCAGGCTGCAgtgagttgaa ... atgttgtcagGTTGAGTCTCATAAGCGGGCTGCTGCTGCAACTGCTACTGGGAAATTTAAG
EST: gi|71865094|gb|DT014149.1|DT014149
EST:     ATGTTGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACCAGGCTGCA                         GTTGAGTCTCATAAGCGGGCTGCTGCTGCAACTGCTACTGGGAAATTTAAG
genomic: ATGTTGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACCAGGCTGCAgtgagttgaa ... atgttgtcagGTTGAGTCTCATAAGCGGGCTGCTGCTGCAACTGCTACTGGGAAATTTAAG
EST: gi|110712560|gb|EE090321.1|EE090321
EST:     TGTCGCACATCGTTTTTGGTGTAACAAGGCAGGAGCAGGACCAGGCTGCA                         GTTGAGTCTCATAAGCGGGCTGCTGCTGCAACTGCTACTGGGAAAATTAAG
genomic: TGTTGCACATCGTTTT-GGTGTAACAAGGCAGGAGCAGGACCAGGCTGCAgtgagttgaa ... atgttgtcagGTTGAGTCTCATAAGCGGGCTGCTGCTGCAACTGCTACTGGGAAATTTAAG
EST: gi|30324476|gb|CD007738.1|CD007738
EST:     ATGTCGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACCAGGCTGCA                         GTTGAGTCTCATAAGCGGGCTGCTGCTGCAACTGCTACTGGGAAATTTAAG
genomic: ATGTTGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACCAGGCTGCAgtgagttgaa ... atgttgtcagGTTGAGTCTCATAAGCGGGCTGCTGCTGCAACTGCTACTGGGAAATTTAAG
EST: gi|110370828|gb|EC934376.1|EC934376
EST:     ATGTCGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACCAGGCTGCA                         GTTGAGTCTCATAAGCGGGCTGCTGCTGCAACTGCTACTGGGAAATTTAAG
genomic: ATGTTGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACCAGGCTGCAgtgagttgaa ... atgttgtcagGTTGAGTCTCATAAGCGGGCTGCTGCTGCAACTGCTACTGGGAAATTTAAG
EST: gi|161718392|gb|FC067286.1|FC067286
EST:     ATGTCGCACATCGTTTTGGTGTA-CAAGGCAGGAGCAGGACCAGGCTGCA                         GTTGAGTCTCATAAGCGGGCTGCTGCTG
genomic: ATGTTGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACCAGGCTGCAgtgagttgaa ... atgttgtcagGTTGAGTCTCATAAGCGGGCTGCTGCTG
EST: gi|161719091|gb|FC065411.1|FC065411
EST:     ATGTCGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACCAGGCTGCA                         GTTGAGTCTCATAAGCGGGCTGCTGCTGCAACTGCTACTGGGAAATTTAAG
genomic: ATGTTGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACCAGGCTGCAgtgagttgaa ... atgttgtcagGTTGAGTCTCATAAGCGGGCTGCTGCTGCAACTGCTACTGGGAAATTTAAG
EST: gi|27585593|gb|CB008288.1|CB008288
EST:     ATGTTGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACCAGGCTGCA                         GTTGAGTCTCATAAGCGGGCTGCTGCTGCAACTGCTACTGGGAAATTTAAG
genomic: ATGTTGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACCAGGCTGCAgtgagttgaa ... atgttgtcagGTTGAGTCTCATAAGCGGGCTGCTGCTGCAACTGCTACTGGGAAATTTAAG
EST: gi|161719599|gb|FC067979.1|FC067979
EST:     ATGTCGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACCAGGCTGCA                         GTTGAGTCTCATAAGCGGGCTGCTGCTGCAACTGCTACTGGGAAATTTAAG
genomic: ATGTTGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACCAGGCTGCAgtgagttgaa ... atgttgtcagGTTGAGTCTCATAAGCGGGCTGCTGCTGCAACTGCTACTGGGAAATTTAAG
EST: gi|110726811|gb|EE102917.1|EE102917
EST:     ATGTCGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACCAGGCTGCA                         GTTGAGTCTCATAAGCGGGCTGCTGCTGCAACTGCTACTGGGAAATTTAAG
genomic: ATGTTGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACCAGGCTGCAgtgagttgaa ... atgttgtcagGTTGAGTCTCATAAGCGGGCTGCTGCTGCAACTGCTACTGGGAAATTTAAG
EST: gi|110718357|gb|EE095094.1|EE095094
EST:     ATGTCGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACCAGGCTGCA                         GTTGAGTCTCATAAGCGGGCTGCTGCTGCAACTGCTACTGGGAAATTTAAG
genomic: ATGTTGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACCAGGCTGCAgtgagttgaa ... atgttgtcagGTTGAGTCTCATAAGCGGGCTGCTGCTGCAACTGCTACTGGGAAATTTAAG
EST: gi|30325609|gb|CD008871.1|CD008871
EST:     ATGTCGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACCAGGCTGCA                         GTTGAGTCTCATAAGCGGGCTGCTGCTGCAACTGCTACTGGGAAATTTAAG
genomic: ATGTTGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACCAGGCTGCAgtgagttgaa ... atgttgtcagGTTGAGTCTCATAAGCGGGCTGCTGCTGCAACTGCTACTGGGAAATTTAAG
EST: gi|32270335|gb|CD719494.1|CD719494
EST:     ATGTCGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACCAGGCTGCA                         GTTGAGTCTCATAAGCGGGCTGCTGCTGCAACTGCTACTGGGAAATTTAAG
genomic: ATGTTGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACCAGGCTGCAgtgagttgaa ... atgttgtcagGTTGAGTCTCATAAGCGGGCTGCTGCTGCAACTGCTACTGGGAAATTTAAG
EST: gi|71859322|gb|DT008377.1|DT008377
EST:     ATGTTGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACCAGGCTGCA                         GTTGAGTCTCATAAGCGGGCTGCTGCTGCAACTGCTACTGGGAAATTTAAG
genomic: ATGTTGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACCAGGCTGCAgtgagttgaa ... atgttgtcagGTTGAGTCTCATAAGCGGGCTGCTGCTGCAACTGCTACTGGGAAATTTAAG
EST: gi|32267658|gb|CD716621.1|CD716621
EST:     ATGTCGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACCAGGCTGCA                         GTTGAGTCTCATAAGCGGGCTGCTGCTGCAACTGCTACTGGGAAATTTAAG
genomic: ATGTTGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACCAGGCTGCAgtgagttgaa ... atgttgtcagGTTGAGTCTCATAAGCGGGCTGCTGCTGCAACTGCTACTGGGAAATTTAAG
EST: gi|30302300|gb|CB979094.1|CB979094
EST:     GGTGT-ACAAGGCAGGAGCAGGACCAGGCTGCA                         GTTGAGTCTCATAAGCGGGCTGCTGCTGCAACTGCTACTGGGAAATTTAAG
genomic: GGTGTAACAAGGCAGGAGCAGGACCAGGCTGCAgtgagttgaa ... atgttgtcagGTTGAGTCTCATAAGCGGGCTGCTGCTGCAACTGCTACTGGGAAATTTAAG
EST: gi|110724007|gb|EE099460.1|EE099460
EST:     ATGTCGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACCAGGCTGCA                         GTTGAGTCTCATAAGCGGGCTGCTGCTGCAACTGCTACTGGGGAATTTAAG
genomic: ATGTTGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACCAGGCTGCAgtgagttgaa ... atgttgtcagGTTGAGTCTCATAAGCGGGCTGCTGCTGCAACTGCTACTGGGAAATTTAAG
EST: gi|110719453|gb|EE094592.1|EE094592
EST:     ATGTCGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACCAGGCTGCA                         GTTGAGTCTCATAAGCGGGCTGCTGCTGCAACTGCTACTGGGAAATTTAAG
genomic: ATGTTGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACCAGGCTGCAgtgagttgaa ... atgttgtcagGTTGAGTCTCATAAGCGGGCTGCTGCTGCAACTGCTACTGGGAAATTTAAG
EST: gi|110720013|gb|EE095623.1|EE095623
EST:     ATGTCGCACATCGTTTTGGTGTAACAAGGCAAGAGCAGGACCAGGCTGCA                         GTTGAGTCTCATAAGCGGGCTGCTGCTGCAACTGCTACTGGGAAATTTAAG
genomic: ATGTTGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACCAGGCTGCAgtgagttgaa ... atgttgtcagGTTGAGTCTCATAAGCGGGCTGCTGCTGCAACTGCTACTGGGAAATTTAAG
EST: gi|33407958|gb|CF213585.1|CF213585
EST:     ATGTCGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACCAGGCTGCA                         GTTGAGCCTCATAAGCGGGCTGCTGCTGCAACTGCTACTGGGAAATTTAAG
genomic: ATGTTGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACCAGGCTGCAgtgagttgaa ... atgttgtcagGTTGAGTCTCATAAGCGGGCTGCTGCTGCAACTGCTACTGGGAAATTTAAG
EST: gi|30323063|gb|CD006325.1|CD006325
EST:     ATGTCGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACCAGGCTGCA                         GTTGAGTCTCATAAGCGGGCTGCTGCTGCAACTGCTACTGGGAAATTTAAG
genomic: ATGTTGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACCAGGCTGCAgtgagttgaa ... atgttgtcagGTTGAGTCTCATAAGCGGGCTGCTGCTGCAACTGCTACTGGGAAATTTAAG
EST: gi|71859597|gb|DT008652.1|DT008652
EST:     ATGTCGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACCAGGCTGCA                         GTTGAGTCTCATAAGCGGGCTGCTGC
genomic: ATGTTGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACCAGGCTGCAgtgagttgaa ... atgttgtcagGTTGAGTCTCATAAGCGGGCTGCTGC
EST: gi|110712793|gb|EE088151.1|EE088151
EST:     ATGTCGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACCAGGCTGCA                         GTTGAGTCTCATAAGCGGGCTGCTGCTGCAACTGCTACTGGGAAATTTAAG
genomic: ATGTTGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACCAGGCTGCAgtgagttgaa ... atgttgtcagGTTGAGTCTCATAAGCGGGCTGCTGCTGCAACTGCTACTGGGAAATTTAAG
EST: gi|156739147|gb|EV243268.1|EV243268
EST:     ATGTCGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACCAGGCTGCA                         GTTGAGTCTCATAAGCGGGCTGCTGCTGCAACTGCTACTGGGAAATTTAAG
genomic: ATGTTGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACCAGGCTGCAgtgagttgaa ... atgttgtcagGTTGAGTCTCATAAGCGGGCTGCTGCTGCAACTGCTACTGGGAAATTTAAG
EST: gi|27582126|gb|CB004821.1|CB004821
EST:     ATGTCGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACCAGGCTGCA                         GTTGAGTCTCATAAGCGGGCTGCTGCTGCAACTGCTACTGGGAAATTTAAG
genomic: ATGTTGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACCAGGCTGCAgtgagttgaa ... atgttgtcagGTTGAGTCTCATAAGCGGGCTGCTGCTGCAACTGCTACTGGGAAATTTAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACTTCAGAAAATGTTGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACCAGGCTGCAgtgagttgaatgaattatcagtggagtttttgccttttggttcaatgttgttattcttctgattacatttatgttgtcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG