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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcttcccccttatctcttgttactttttctaagtgtaggattcttttcaggaacatttcgttgacctaagagtgccaacaactctttctttaattctgccagGTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACTTCAGAAAATGTTGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACC

Basic information

species Vitis vinifera
transcript Vv05s0051g00720.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0051g00720.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: LOC_Os02g57260.1 (Oryza sativa), 3'ss of exon 6
gtatgcttcccccttatctcttgttactttttctaagtgtaggattcttttcaggaacatt-tcgttgacctaagagtgccaacaactctttctttaattctgccagGTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACTTCAGAAAATGTTGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACC
                     | | | || |  | ||     ||   |  || | |    | | |||  |    ||   |    ||| |    |   | | ||  ||||||| ||| |   | |||| || ||||||||| | |||||||| || || || ||||||||||| || || | |||||||||||| || |||||||| |
--------------------gtatgaattcta-tgagcaccagagcatcctctgtatttctgttgttctctggtgatgccttgtaacaccacgt---actttgt-agGTAAATGAAGTCCAGAAAGCACAGGATTGTCTTTTGCCCATGGGGATAACGTCCGAAAATGTTGCGCACCGATATGGTGTAACAAGACAAGAGCAGGATC

upper sequence: Vv05s0051g00720.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM5G848768_T02 (Zea mays), 3'ss of exon 6
gtatgcttcccccttatctcttgttacttt--ttctaagtgtaggattcttttcaggaacatttcgttgacctaagagtgcc--aacaactctttctttaattctgccagGTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACTTCAGAAAATGTTGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACC
              ||    || | ||     |   || || |  | | |||||       || |    |    | | |  |  ||||  | ||||| |     ||| || |||  | |||   | |||| || ||||||||||| |||||||| |||||||| ||||||||||| ||||| | ||||||||| ||||| ||||| || |
-------------gtaaggattataaccacaatgtaaattgaaatagttttttcct---ttttacacaaaaaggaaactctcgtaacacatttttctctctccttgc-agATAAGCGCATTCCAGAAAGCACAGGATTGTCTTCTGCCCATGGGAATTACTTCTGAAAATGTTGCCCATCGATATGGTGTAACCAGGCAAGAGCAAGATC

upper sequence: Vv05s0051g00720.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM2G469466_T02 (Zea mays), 3'ss of exon 2
gtatgcttcccccttatctcttgttactttttctaagtgtaggattcttttcaggaacatttcgttgacctaagagtgcc--aacaactctttctttaattctgccagGTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACTTCAGAAAATGTTGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACC
              ||    || |||      ||     | | | |  |||        || |    |    | | |  |  ||||  | ||||| |     ||| || |||  | ||||  | |||| || ||||||||||| |||||||| |||||||| ||||||||||| ||||| | ||||||||| ||||| ||||| || |
-------------gtaaggattattaaccacactgtaaattgaaatagtttttccttt-ttacacaaaaaggaaactttcgtaacacatttttctctctccttgc-agATAAGCGCATTTCAGAAAGCACATGATTGTCTTCTGCCCATGGGAATTACTTCTGAAAATGTTGCCCATCGATATGGTGTAACCAGGCAAGAGCAAGATC

upper sequence: Vv05s0051g00720.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM2G152442_T01 (Zea mays), 3'ss of exon 1
gtatgcttcccccttatctcttgttactttttctaagtgtaggattcttttcaggaacatttcgttgacctaagagtgccaacaactctttctttaattctgccagGTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACTTCAGAAAATGTTGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACC
  |          | || |  ||||     ||  ||  ||    ||   ||     |||    |   || |  |      ||||  | ||| | |  |  ||| || |||  | |||   | |||| || ||||||||||| |||||||| ||||||||  ||||| |||| ||||| | ||||||||| ||||| ||||| || |
aaaaaagaagagataatatgatgttgtaaattgaaatagtttcttttcctttttacacaaaaaggaaactttcg-----taacacatttttgtctcttcttgc-agATAAGCGCATTCCAGAAAGCACATGATTGTCTTCTGCCCATGGGAATTACTTCTAAAAATATTGCCCATCGATATGGTGTAACCAGGCAAGAGCAAGATC

upper sequence: Vv05s0051g00720.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT2G33150.1 (Arabidopsis thaliana), 3'ss of exon 6
gtatgcttcccccttatctcttgttactttttctaagtgtaggattcttttcaggaacatttcgttgacctaagagtgccaacaactctttctttaattctgccagGTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACTTCAGAAAATGTTGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACC
                     |  |  || |      | | |  |  |  |  |      |  |||    ||| |    | | ||  |   || |  || |  ||||| ||| | ||||  ||||| ||  |||||||||| || |||||| |||| ||||||||||| ||||| || ||||||||  ||||||||||||| || |
--------------------gtactgattctctcttatctggagtcttacttgg-----ctctgttattttaatacgtactataatacggactatg-ttatttcagGTGAAGAAGTTTGCACAAGCGCAGAATTGTCTTCTTCCTATGGGTGTTACGTCAGAAAATGTAGCACAACGCTTTGGTGTCTCAAGGCAGGAGCAAGATC

upper sequence: Vv05s0051g00720.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT1G04710.1 (Arabidopsis thaliana), 3'ss of exon 6
gtatgcttcccccttatctcttgttactttttctaagtgtaggattcttttcaggaacatttcgttgacctaagagtgccaacaactctttctttaattctgccagGTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACTTCAGAAAATGTTGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACC
   | |    | |||||    |||  || |   |   |   ||| | | || |    |  |  |||||   |  ||  |  | |   | |  | |  || |   |||| ||| | ||||  ||||| ||  |||| ||||| || ||||||||||||||||||||||| ||||| || |||  |||  ||||| |||||||||| |
--gtaccatgctcttat----tgtctctctccttccttcccggagtgtattgattggc--tctgttgaatgattagctctcatagaacgtattctg-ttgttttagGTGAAGAAGTTTGAACAAGCTCACAATTGCCTTCTTCCAATGGGTATTACTTCAGAAAATGTAGCACACCGGTTTAATGTTTCAAGGGAGGAGCAGGATC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34549360|gb|CF517592.1|CF517592
EST:     AATCCATGACAGCAAATCCAATGGCTTGGGAAGGGTCAATCAACCCTAAG                         GTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACT
genomic: AATCCATGACAGCAAATCCAATGGCTTGGGAAGGGTCAATCAACCCTAAGgtatgcttcc ... attctgccagGTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACT
EST: gi|110718623|gb|EE095664.1|EE095664
EST:     AATCCATGACAGCAAATCCAATGGCTTGGGAAGGGTCAATCAACCCTAAG                         GTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACT
genomic: AATCCATGACAGCAAATCCAATGGCTTGGGAAGGGTCAATCAACCCTAAGgtatgcttcc ... attctgccagGTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACT
EST: gi|27585487|gb|CB008182.1|CB008182
EST:     AATCCATGACAGCAAATCCAATGGCTTGGGAAGGGTCAATCAACCCTAAG                         GTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACT
genomic: AATCCATGACAGCAAATCCAATGGCTTGGGAAGGGTCAATCAACCCTAAGgtatgcttcc ... attctgccagGTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACT
EST: gi|110711203|gb|EE087460.1|EE087460
EST:     AATCCATGACAGCAAATCCAATGGCTTGGGAAGGGTCAATCAACCCTAAA                         GTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACT
genomic: AATCCATGACAGCAAATCCAATGGCTTGGGAAGGGTCAATCAACCCTAAGgtatgcttcc ... attctgccagGTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACT
EST: gi|110718621|gb|EE095662.1|EE095662
EST:     AATCCATGACAGCAAATCCAATGGCTTGGGAAGGGTCAATCAACCCTAAG                         GTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACT
genomic: AATCCATGACAGCAAATCCAATGGCTTGGGAAGGGTCAATCAACCCTAAGgtatgcttcc ... attctgccagGTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACT
EST: gi|71861527|gb|DT010582.1|DT010582
EST:     AATCCATGACAGCAAATCCAATGGCTTGGGAAGGGTCAATCAACCCTAAG                         GTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACT
genomic: AATCCATGACAGCAAATCCAATGGCTTGGGAAGGGTCAATCAACCCTAAGgtatgcttcc ... attctgccagGTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACT
EST: gi|71860333|gb|DT009388.1|DT009388
EST:     AATCCATGACAGCAAATCCAATGGCTTGGGAAGGGTCAATCAACCCTAAG                         GTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACT
genomic: AATCCATGACAGCAAATCCAATGGCTTGGGAAGGGTCAATCAACCCTAAGgtatgcttcc ... attctgccagGTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACT
EST: gi|161709217|gb|FC060523.1|FC060523
EST:     AATCCATGACAGCAAATCCAATGGCTTGGGAAGGGTCAATCAACCCTAAG                         GTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACT
genomic: AATCCATGACAGCAAATCCAATGGCTTGGGAAGGGTCAATCAACCCTAAGgtatgcttcc ... attctgccagGTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACT
EST: gi|27582620|gb|CB005315.1|CB005315
EST:     AATCCATGACAGCAAATCCAATGGCTTGGGAAGGGTCAATCAACCCTAAG                         GTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACT
genomic: AATCCATGACAGCAAATCCAATGGCTTGGGAAGGGTCAATCAACCCTAAGgtatgcttcc ... attctgccagGTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACT
EST: gi|161714929|gb|FC062707.1|FC062707
EST:     AATCCATGACAGCAAATCCAATGGCTTGGGAAGGGTCAATCAACCCTAAG                         GTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACT
genomic: AATCCATGACAGCAAATCCAATGGCTTGGGAAGGGTCAATCAACCCTAAGgtatgcttcc ... attctgccagGTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACT
EST: gi|161712660|gb|FC062232.1|FC062232
EST:     AATCCATGACAGCAAATCCAATGGCTTGGGAAGGGTCAATCAACCCTAAG                         GTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACT
genomic: AATCCATGACAGCAAATCCAATGGCTTGGGAAGGGTCAATCAACCCTAAGgtatgcttcc ... attctgccagGTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACT
EST: gi|71854763|gb|DT003818.1|DT003818
EST:     AATCCATGACAGCAAATCCAATGGCTTGGGAAGGGTCAATCAACCCTAAG                         GTAAAGGAATTTGTGCA
genomic: AATCCATGACAGCAAATCCAATGGCTTGGGAAGGGTCAATCAACCCTAAGgtatgcttcc ... attctgccagGTAAAGGAATTTGTGCA
EST: gi|71865094|gb|DT014149.1|DT014149
EST:     AATCCATGACAGCAAATCCAATGGCTTGGGAAGGGTCAATCAACCCTAAG                         GTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACT
genomic: AATCCATGACAGCAAATCCAATGGCTTGGGAAGGGTCAATCAACCCTAAGgtatgcttcc ... attctgccagGTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACT
EST: gi|110712560|gb|EE090321.1|EE090321
EST:     AATCCATGACAGCAAATCCAATGGCTTGAGAAGGGTCAATCAACCCTAAA                         GTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACT
genomic: AATCCATGACAGCAAATCCAATGGCTTGGGAAGGGTCAATCAACCCTAAGgtatgcttcc ... attctgccagGTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACT
EST: gi|161713057|gb|FC062138.1|FC062138
EST:     AATCCATGACAGCAAATCCAATGGCTTGGGAAGGGTCAATCAACCCTAAG                         GTAAAGGAATTTGTGTCA-GCTCCA-GATTGTCTTCTCCCCATGGGTATTA
genomic: AATCCATGACAGCAAATCCAATGGCTTGGGAAGGGTCAATCAACCCTAAGgtatgcttcc ... attctgccagGTAAAGGAATTTGTG-CAAGC-CCAAGATTGTCTTCTCCCCATGGGTATTA
EST: gi|161718392|gb|FC067286.1|FC067286
EST:     AATCCATGACAGCAAATCCAATGGCTTGGGAAGGGTCAATCAACCCTAAG                         GTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACT
genomic: AATCCATGACAGCAAATCCAATGGCTTGGGAAGGGTCAATCAACCCTAAGgtatgcttcc ... attctgccagGTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACT
EST: gi|161719091|gb|FC065411.1|FC065411
EST:     AATCCATGACAGCAAATCCAATGGCTTGGGAAGGGTCAATCAACCCTAAG                         GTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACT
genomic: AATCCATGACAGCAAATCCAATGGCTTGGGAAGGGTCAATCAACCCTAAGgtatgcttcc ... attctgccagGTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACT
EST: gi|27585593|gb|CB008288.1|CB008288
EST:     TGACAGCAAATCCAATGGCTTGGGAAGGGTCAATCAACCCTAAG                         GTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACT
genomic: TGACAGCAAATCCAATGGCTTGGGAAGGGTCAATCAACCCTAAGgtatgcttcc ... attctgccagGTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACT
EST: gi|161719599|gb|FC067979.1|FC067979
EST:     AATCCATGACAGCAAATCCAATGGCTTGGGAAGGGTCAATCAACCCTAAG                         GTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACT
genomic: AATCCATGACAGCAAATCCAATGGCTTGGGAAGGGTCAATCAACCCTAAGgtatgcttcc ... attctgccagGTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACT
EST: gi|110718357|gb|EE095094.1|EE095094
EST:     AATCCATGACAGCAAATCCAATGGCTTGGGAAGGGTCAATCAACCCTAAG                         GTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACT
genomic: AATCCATGACAGCAAATCCAATGGCTTGGGAAGGGTCAATCAACCCTAAGgtatgcttcc ... attctgccagGTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACT
EST: gi|71860350|gb|DT009405.1|DT009405
EST:     AATCCATGACAGCAAATCCAATGGCTTGGGAAGGGTCAATCAACCCTAAG                         GTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACT
genomic: AATCCATGACAGCAAATCCAATGGCTTGGGAAGGGTCAATCAACCCTAAGgtatgcttcc ... attctgccagGTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACT
EST: gi|71864464|gb|DT013519.1|DT013519
EST:     AATCCATGACAGCAAATCCAATGGCTTGGGAAGGGTCAATCAACCCTAAG                         GTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACT
genomic: AATCCATGACAGCAAATCCAATGGCTTGGGAAGGGTCAATCAACCCTAAGgtatgcttcc ... attctgccagGTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACT
EST: gi|71859322|gb|DT008377.1|DT008377
EST:     AATCCATGACAGCAAATCCAATGGCTTGGGAAGGGTCAATCAACCCTAAG                         GTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACT
genomic: AATCCATGACAGCAAATCCAATGGCTTGGGAAGGGTCAATCAACCCTAAGgtatgcttcc ... attctgccagGTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACT
EST: gi|18458165|gb|BM436443.1|BM436443
EST:     AATCCATGACAGCAAATCCAATGGCTTGGGAAGGGTCAATCAACCCTAAG                         GTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACT
genomic: AATCCATGACAGCAAATCCAATGGCTTGGGAAGGGTCAATCAACCCTAAGgtatgcttcc ... attctgccagGTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACT
EST: gi|71861363|gb|DT010418.1|DT010418
EST:     AATCCATGACAGCAAATCCAATGGCTTGGGAAGGGTCAATCAACCCTAAG                         GTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACT
genomic: AATCCATGACAGCAAATCCAATGGCTTGGGAAGGGTCAATCAACCCTAAGgtatgcttcc ... attctgccagGTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACT
EST: gi|110724007|gb|EE099460.1|EE099460
EST:     AATCCATGACAGCAAATCCAATGGCTTGGGAAGGGTCAATCAACCCTAAG                         GTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACT
genomic: AATCCATGACAGCAAATCCAATGGCTTGGGAAGGGTCAATCAACCCTAAGgtatgcttcc ... attctgccagGTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACT
EST: gi|110719453|gb|EE094592.1|EE094592
EST:     AATCCATGACAGCAAATCCAATGGCTTGGGAAGGGTCAATCAACCCTAAG                         GTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACT
genomic: AATCCATGACAGCAAATCCAATGGCTTGGGAAGGGTCAATCAACCCTAAGgtatgcttcc ... attctgccagGTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACT
EST: gi|110720013|gb|EE095623.1|EE095623
EST:     AATCCATGACAGCAAATCCAATGGCTTGGGAAGGGTCAATCAACCCTAAG                         GTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACT
genomic: AATCCATGACAGCAAATCCAATGGCTTGGGAAGGGTCAATCAACCCTAAGgtatgcttcc ... attctgccagGTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACT
EST: gi|33407958|gb|CF213585.1|CF213585
EST:     AATCCATGACAGCAAATCCAATGGCTTGGGAAGGGTCAATCAACCCTAAG                         GTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACT
genomic: AATCCATGACAGCAAATCCAATGGCTTGGGAAGGGTCAATCAACCCTAAGgtatgcttcc ... attctgccagGTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACT
EST: gi|71859597|gb|DT008652.1|DT008652
EST:     AATCCATGACAGCAAATCCAATGGCTTGGGAAGGGTCAATCAACCCTAAG                         GTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACT
genomic: AATCCATGACAGCAAATCCAATGGCTTGGGAAGGGTCAATCAACCCTAAGgtatgcttcc ... attctgccagGTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACT
EST: gi|110712793|gb|EE088151.1|EE088151
EST:     AATCCATGACAGCAAATCCAATGGCTTGGGAAGGGTCAATCAACCCTAAG                         GTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACT
genomic: AATCCATGACAGCAAATCCAATGGCTTGGGAAGGGTCAATCAACCCTAAGgtatgcttcc ... attctgccagGTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACT
EST: gi|71863451|gb|DT012506.1|DT012506
EST:     AATCCATGACAGCAAATCCAATGGCTTGNGAAGGGTCAATCAACCCTAAG                         GTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACT
genomic: AATCCATGACAGCAAATCCAATGGCTTGGGAAGGGTCAATCAACCCTAAGgtatgcttcc ... attctgccagGTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACT
EST: gi|156739147|gb|EV243268.1|EV243268
EST:     AATCCATGACAGCAAATCCAATGGCTTGGGAAGGGTCAATCAACCCTAAG                         GTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACT
genomic: AATCCATGACAGCAAATCCAATGGCTTGGGAAGGGTCAATCAACCCTAAGgtatgcttcc ... attctgccagGTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACT
EST: gi|27582126|gb|CB004821.1|CB004821
EST:     AATCCATGACAGCAAATCCAATGGCTTGGGAAGGGTCAATCAACCCTAAG                         GTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACT
genomic: AATCCATGACAGCAAATCCAATGGCTTGGGAAGGGTCAATCAACCCTAAGgtatgcttcc ... attctgccagGTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACT
EST: gi|71862751|gb|DT011806.1|DT011806
EST:     AATCCATGACAGCAAATCCAATGGCTTGGGAAGGGTCAATCAACCCTAAG                         GTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACT
genomic: AATCCATGACAGCAAATCCAATGGCTTGGGAAGGGTCAATCAACCCTAAGgtatgcttcc ... attctgccagGTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caggaacatttcgttgacctaagagtgccaacaactctttctttaattctgccagGTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACTTCAGAAAATGTTGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACC
                                        ctttaat  putative branch site (score: 4)
                                  ctctttctttaattct  CT-rich tract
                                     tttctttaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgcttcccccttatctcttgttactttttctaagtgtaggattcttttcaggaacatttcgttgacctaagagtgccaacaactctttctttaattctgccagGTAAAGGAATTTGTGCAAGCCCAAGATTGTCTTCTCCCCATGGGTATTACTTCAGAAAATGTTGCACATCGTTTTGGTGTAACAAGGCAGGAGCAGGACC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG