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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatttccttgaactatcctttatatttttggttttgtacccatttcattgttcacaaatattatatctgtgatttcagAAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGGCAGTTGCTGATGTAGCTGCTGCAATTAAAGCTGGGTTTTATGACATTG

Basic information

species Vitis vinifera
transcript Vv05s0051g00720.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0051g00720.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: LOC_Os02g57260.1 (Oryza sativa), 3'ss of exon 4
--------gtatatttccttgaactatcctttata--------tttttggttttg--tacccatttcattgttcacaaatattatatctgtgatttcagAAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGGCAGTTGCTGATGTAGCTGCTGCAATTAAAGCTGGGTTTTATGACATTG
        || | |    ||  |  | | | |  |        || ||  || ||   ||   |||||||      |  |    | |||||   | ||||||  || ||||| |||||||| ||| |||||||||| |||||  | |||||||| |||||||| || || || |||||||||||||| || ||||| |
gtaatactgtgtttgcggttatatcaccatatgaagacagggcttctttattatggacactggtttcatttgcttgattttacttttctgtcgatgcagAAAACGTTCCTGTTAGAACTGTCAACCGGCAATGTTCCTCTGGATTACAGGCAGTGGCTGATGTTGCCGCGGCCATTAAAGCTGGGTTCTACGACATAG

upper sequence: Vv05s0051g00720.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM5G848768_T02 (Zea mays), 3'ss of exon 4
----------------------------gtatatttcct----tgaa-----ctatcctttatatttttggtttt-----gtacccatttcattgttcacaaatattatatctgtgatttcagAAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGGCAGTTGCTGATGTAGCTGCTGCAATTAAAGCTGGGTTTTATGACATTG
                            | ||  | |||    ||||     | ||||| | |  |  |||         | |   ||     ||    | |  || || | |||  || ||||||| || ||||| |||||||| ||| | || ||||||||||| || |||||||| |||||||| || ||||| || || ||||| |  |||||||| |
gtaactgataactgttgtttacgatcatgcatgctacctaatatgaagaagacgatcctatcttctggtggacaaaaaaagaagagataatgatgcatcccatgatgatgt-tgttgttgcagAAACCGTCCCTGTTAGAACTGTCAACCGCCAGTGTTCATCTGGGCTACAGGCAGTAGCTGATGTCGCAGCTGCTATAAAGGCTGGTTACTATGACATAG

upper sequence: Vv05s0051g00720.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA20G18980.1 (Glycine max), 3'ss of exon 4
-------gtatatttccttgaactatcctttatatttttggttttgtacccatttcattgttcacaaatattatatc-tgtgatttcagAAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGGCAGTTGCTGATGTAGCTGCTGCAATTAAAGCTGGGTTTTATGACATTG
           ||||   |  | | | |||   |   |    | ||  |    ||  || || | |  | | || |  | |   | |||||||||||||||| || ||||| || ||||||||||||||||| || ||||| |||||||||||||||||||| || |  |||||||| ||||||||||
gtatgtttagaatttagatagattgtgcttctgaacctgatatatgatctgggtttgttatttatacttgtgatgttattttcatccagAAACTGTGCCTGTTAGGACTGTTAATAGGCAATGTTCATCTGGGCTCCAGGCTGTTGCTGATGTAGCTGCTGCTATAAGGGCTGGGTTCTATGACATTG

upper sequence: Vv05s0051g00720.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA10G24590.3 (Glycine max), 3'ss of exon 4
gtatattt---ccttgaactatcc---tttatatttttggt-tttgtacccatttcattgttcacaaatattatatc-tgtgatttcagAAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGGCAGTTGCTGATGTAGCTGCTGCAATTAAAGCTGGGTTTTATGACATTG
|||| | |     ||  |   |      || ||    || | | ||   |   ||   | || | | || | || |  | |   | |||||||||||||||| || || || || ||||||||||||||||| || ||||| || ||||||||||||||||| || |  |||||||| ||||||||||
gtatgtctagaatttagatagtttgtgcttgtaaacctgttatatgattcgggtttggtatttatacatgtgatgttattttcatccagAAACTGTGCCTGTTAGGACCGTTAATAGGCAATGTTCATCTGGGCTCCAGGCTGTCGCTGATGTAGCTGCTGCTATAAGGGCTGGGTTCTATGACATTG

upper sequence: Vv05s0051g00720.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT2G33150.1 (Arabidopsis thaliana), 3'ss of exon 4
gtatatttcct---tgaactatcctttatatttttgg-----ttttgtacccatttcattgttcacaaatattat-atctgtgatttcagAAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGGCAGTTGCTGATGTAGCTGCTGCAATTAAAGCTGGGTTTTATGACATTG
|||| |||| |   || ||  | |  || | |  ||       |||||    |||||  |||   |  ||  | | || |    || ||||||| ||| |||||||||||||||| || || || |||||||| |||||||| |||||||||||||| ||||| |||||||| || |||||||||||||
gtatgtttcttctatgtacagtacaatacaatggtgaaaagtctttgtttttatttc-ctgtatgctcatcctgttatgttcatttgcagAAACCGTGGCTGTCAGAACTGTGAATAGACAGTGCTCATCTGGGCTTCAGGCTGTTGCTGATGTAGCCGCTGCCATTAAAGCGGGATTTTATGACATTG

upper sequence: Vv05s0051g00720.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT1G04710.1 (Arabidopsis thaliana), 3'ss of exon 4
---gtatatttccttgaactatcct--ttatatttttggttttgtacccatttcattgttcacaaatattatatctgt--gatttcagAAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGGCAGTTGCTGATGTAGCTGCTGCAATTAAAGCTGGGTTTTATGACATTG
    ||| ||    || | |||  |  |  |   | |  | || |      ||  ||||   |  ||  | | | |||  | |   ||||||||| ||  ||||||| |||||||| || ||||||||||| |||||||| ||||||||||| || ||||| || |||||||| |||||||||||||
gtaatattttcttctgtattatggtaatcctgaatcttttcttctttttcgtttgttgtatgcttatgctctttttgtctgttggaagAAACTGTTCCCATCAGAACCGTGAACAGACAGTGTTCATCTGGGCTTCAGGCTGTTGCTGATGTTGCCGCTGCCATAAAAGCTGGTTTTTATGACATTG

upper sequence: Vv05s0051g00720.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: PP1S55_275V6.1 (Physcomitrella patens), 3'ss of exon 4
-------------------------------------------------------------------------------------------------------------gtatatttccttga-actatccttt---atatttttg---gttttgtacccatttcattgttcacaaata-ttatatctg-tgatttcagAAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGGCAGTTGCTGATGTAGCTGCTGCAATTAAAGCTGGGTTTTATGACATTG-
                                                                                                              ||| | |  || |   | |   ||   ||   |||      |   |    ||||   |  | | || |  ||   | ||  |    ||||||||||||| || |||||||||||||||||||| |||||||| || || || ||||| |||||||| || || |||||||| || || ||||| |||| 
gtgagcttatagctatgtttcttatggccatatatgtaatgccgctcaggaagatagttgtctttttcatgggagtgtttaatgcgcaggtgactaataatttagggaaatatgtctattttatgttgtttattgaaatgcctttatgaactccattgagatttggcttctgataagttcttccgtgtggcggcaacagAAACTGTGCCCGTTAGAACTGTGAACAGGCAATGCTCATCTGGACTGCAAGCTGTTGCGGATGTAGCGGCAGCTATTAAAGCAGGTTTCTATGATATTGG

upper sequence: Vv05s0051g00720.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: EFJ35624 (Selaginella moellendorffii), 3'ss of exon 4
gtatatttccttgaactatcctttatatttttggttttgtacccatttcattgttcacaaatattatatctgtgatttcagAAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGGCAGTTGCTGATGTAGCTGCTGCAATTAAAGCTGGGTTTTATGACATTG
|| |||    ||    | |  | |||||   | |||||     ||   |||||     || | |||| ||| || |   |||||||||||||||  | || ||||||||||||||||| ||||| || || ||||| |||||||| |  ||||| || || || || || ||||| ||||
gtttatgatttttctttgttttctatataacttgtttttctttca--ccattgagactaacttttatgtct-tggt---agAAACTGTGCCTGTTCGTACCGTGAACAGGCAATGTTCTTCTGGCCTCCAAGCAGTAGCTGATGTTGTGGCTGCTATCAAGGCCGGATTCTATGATATTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161708449|gb|FC057874.1|FC057874
EST:     CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTG                         AAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
genomic: CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTGgtatatttcc ... gtgatttcagAAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
EST: gi|34549360|gb|CF517592.1|CF517592
EST:     CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTG                         AAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
genomic: CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTGgtatatttcc ... gtgatttcagAAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
EST: gi|161707669|gb|FC056911.1|FC056911
EST:     CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTG                         AAACTGTGCCTGTCAGAACTGTGA
genomic: CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTGgtatatttcc ... gtgatttcagAAACTGTGCCTGTCAGAACTGTGA
EST: gi|110718623|gb|EE095664.1|EE095664
EST:     CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTG                         AAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
genomic: CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTGgtatatttcc ... gtgatttcagAAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
EST: gi|161710187|gb|FC060612.1|FC060612
EST:     CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTG                         AAACTGTGCCTGTCAGAACTGTGA
genomic: CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTGgtatatttcc ... gtgatttcagAAACTGTGCCTGTCAGAACTGTGA
EST: gi|27585487|gb|CB008182.1|CB008182
EST:     CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTG                         AAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
genomic: CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTGgtatatttcc ... gtgatttcagAAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
EST: gi|110711203|gb|EE087460.1|EE087460
EST:     CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTG                         AAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
genomic: CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTGgtatatttcc ... gtgatttcagAAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
EST: gi|110718621|gb|EE095662.1|EE095662
EST:     CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTG                         AAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
genomic: CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTGgtatatttcc ... gtgatttcagAAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
EST: gi|71861527|gb|DT010582.1|DT010582
EST:     CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTG                         AAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
genomic: CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTGgtatatttcc ... gtgatttcagAAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
EST: gi|161710425|gb|FC059024.1|FC059024
EST:     CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTG                         AAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGT
genomic: CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTGgtatatttcc ... gtgatttcagAAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGT
EST: gi|71860333|gb|DT009388.1|DT009388
EST:     CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTG                         AAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
genomic: CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTGgtatatttcc ... gtgatttcagAAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
EST: gi|37187289|gb|CF606642.1|CF606642
EST:     CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTG                         AAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
genomic: CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTGgtatatttcc ... gtgatttcagAAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
EST: gi|27582620|gb|CB005315.1|CB005315
EST:     GCTGCATTCTATGCTGGTTTCCCTG                         AAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
genomic: GCTGCATTCTATGCTGGTTTCCCTGgtatatttcc ... gtgatttcagAAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
EST: gi|161714929|gb|FC062707.1|FC062707
EST:     CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTG                         AAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
genomic: CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTGgtatatttcc ... gtgatttcagAAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
EST: gi|161712660|gb|FC062232.1|FC062232
EST:     CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTG                         AAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
genomic: CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTGgtatatttcc ... gtgatttcagAAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
EST: gi|71854763|gb|DT003818.1|DT003818
EST:     CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTG                         AAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
genomic: CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTGgtatatttcc ... gtgatttcagAAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
EST: gi|71865094|gb|DT014149.1|DT014149
EST:     CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTG                         AAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
genomic: CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTGgtatatttcc ... gtgatttcagAAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
EST: gi|110712560|gb|EE090321.1|EE090321
EST:     CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTG                         AAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
genomic: CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTGgtatatttcc ... gtgatttcagAAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
EST: gi|161713057|gb|FC062138.1|FC062138
EST:     CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTG                         AAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
genomic: CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTGgtatatttcc ... gtgatttcagAAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
EST: gi|161718392|gb|FC067286.1|FC067286
EST:     CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTG                         AAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
genomic: CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTGgtatatttcc ... gtgatttcagAAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
EST: gi|161719091|gb|FC065411.1|FC065411
EST:     CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTG                         AAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
genomic: CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTGgtatatttcc ... gtgatttcagAAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
EST: gi|161719599|gb|FC067979.1|FC067979
EST:     CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTG                         AAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
genomic: CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTGgtatatttcc ... gtgatttcagAAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
EST: gi|110718357|gb|EE095094.1|EE095094
EST:     CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTG                         AAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
genomic: CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTGgtatatttcc ... gtgatttcagAAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
EST: gi|71860350|gb|DT009405.1|DT009405
EST:     CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTG                         AAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
genomic: CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTGgtatatttcc ... gtgatttcagAAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
EST: gi|71864464|gb|DT013519.1|DT013519
EST:     CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTG                         AAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
genomic: CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTGgtatatttcc ... gtgatttcagAAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
EST: gi|71861599|gb|DT010654.1|DT010654
EST:     CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTG                         AAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
genomic: CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTGgtatatttcc ... gtgatttcagAAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
EST: gi|71859322|gb|DT008377.1|DT008377
EST:     CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTG                         AAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
genomic: CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTGgtatatttcc ... gtgatttcagAAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
EST: gi|18458165|gb|BM436443.1|BM436443
EST:     CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTG                         AAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
genomic: CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTGgtatatttcc ... gtgatttcagAAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
EST: gi|71861363|gb|DT010418.1|DT010418
EST:     CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTG                         AAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
genomic: CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTGgtatatttcc ... gtgatttcagAAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
EST: gi|110724007|gb|EE099460.1|EE099460
EST:     CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTG                         AAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
genomic: CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTGgtatatttcc ... gtgatttcagAAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
EST: gi|110719453|gb|EE094592.1|EE094592
EST:     CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTG                         AAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
genomic: CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTGgtatatttcc ... gtgatttcagAAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
EST: gi|71862420|gb|DT011475.1|DT011475
EST:     CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTG                         AAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
genomic: CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTGgtatatttcc ... gtgatttcagAAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
EST: gi|161707322|gb|FC055159.1|FC055159
EST:     CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTG                         AAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTC
genomic: CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTGgtatatttcc ... gtgatttcagAAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTC
EST: gi|71861756|gb|DT010811.1|DT010811
EST:     CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTG                         AAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
genomic: CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTGgtatatttcc ... gtgatttcagAAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
EST: gi|110720013|gb|EE095623.1|EE095623
EST:     CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTG                         AAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
genomic: CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTGgtatatttcc ... gtgatttcagAAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
EST: gi|71859597|gb|DT008652.1|DT008652
EST:     CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTG                         AAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
genomic: CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTGgtatatttcc ... gtgatttcagAAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
EST: gi|110712793|gb|EE088151.1|EE088151
EST:     CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTG                         AAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
genomic: CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTGgtatatttcc ... gtgatttcagAAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
EST: gi|71863451|gb|DT012506.1|DT012506
EST:     CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTG                         AAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
genomic: CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTGgtatatttcc ... gtgatttcagAAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
EST: gi|156739147|gb|EV243268.1|EV243268
EST:     CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTG                         AAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
genomic: CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTGgtatatttcc ... gtgatttcagAAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
EST: gi|27582126|gb|CB004821.1|CB004821
EST:     CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTG                         AAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
genomic: CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTGgtatatttcc ... gtgatttcagAAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
EST: gi|71862751|gb|DT011806.1|DT011806
EST:     CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTG                         AAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG
genomic: CCAAAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGTTTCCCTGgtatatttcc ... gtgatttcagAAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttttggttttgtacccatttcattgttcacaaatattatatctgtgatttcagAAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGGCAGTTGCTGATGTAGCTGCTGCAATTAAAGCTGGGTTTTATGACATTG
                           ttcacaaatattatat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatatttccttgaactatcctttatatttttggttttgtacccatttcattgttcacaaatattatatctgtgatttcagAAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGGCAGTTGCTGATGTAGCTGCTGCAATTAAAGCTGGGTTTTATGACATTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG